[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6257	8020254	NM_031216	SEH1L		SEH1-like (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 6257.
Getting list of p-values for id 6257.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8020254	8123695	NM_206836	PECI	0.771735	5.706605e-22	9.887835e-18	9.887835e-18
2	8020254	8018600	NM_014230	SRP68	0.765691	1.852624e-21	3.210041e-17	1.605020e-17
3	8020254	8111629	NM_153485	NUP155	0.764554	2.302710e-21	3.989906e-17	1.329969e-17
4	8020254	8048120	NM_004044	ATIC	0.760845	4.643347e-21	8.045527e-17	2.011382e-17
5	8020254	8109368	NM_005754	G3BP1	0.758191	7.610953e-21	1.318750e-16	2.637500e-17
6	8020254	8041149	NM_015131	WDR43	0.752691	2.076775e-20	3.598428e-16	5.997379e-17
7	8020254	8170971	NM_001363	DKC1	0.751551	2.548855e-20	4.416400e-16	6.309144e-17
8	8020254	7904254	NM_000701	ATP1A1	0.750287	3.194911e-20	5.535822e-16	6.919777e-17
9	8020254	8110090	NM_022754	SFXN1	0.749972	3.378834e-20	5.854506e-16	6.505006e-17
10	8020254	7924923	NM_018230	NUP133	0.746418	6.324082e-20	1.095774e-15	1.095774e-16
11	8020254	7981919	NM_022807	SNRPN	0.744556	8.746562e-20	1.515517e-15	1.377743e-16
12	8020254	8107520	NM_014350	TNFAIP8	0.743990	9.646493e-20	1.671448e-15	1.392873e-16
13	8020254	8049073			0.743885	9.824085e-20	1.702219e-15	1.309399e-16
14	8020254	8114455	NM_004134	HSPA9	0.742034	1.350816e-19	2.340559e-15	1.671828e-16
15	8020254	8163023	NM_003640	IKBKAP	0.741570	1.462544e-19	2.534149e-15	1.689433e-16
16	8020254	7929116	NM_006413	RPP30	0.740079	1.885743e-19	3.267427e-15	2.042142e-16
17	8020254	8171516	NM_002893	RBBP7	0.740003	1.910235e-19	3.309864e-15	1.946979e-16
18	8020254	8130505	NM_003379	EZR	0.739518	2.073793e-19	3.593261e-15	1.996256e-16
19	8020254	7981032	NM_020414	DDX24	0.738982	2.270845e-19	3.934693e-15	2.070891e-16
20	8020254	8063242	NM_006420	ARFGEF2	0.733378	5.784781e-19	1.002329e-14	5.011645e-16
21	8020254	8151066	NM_018120	ARMC1	0.730957	8.601437e-19	1.490371e-14	7.097005e-16
22	8020254	8073799	NM_013236	ATXN10	0.730090	9.905230e-19	1.716279e-14	7.801269e-16
23	8020254	8010949	NM_016080	GLOD4	0.728825	1.215632e-18	2.106326e-14	9.157938e-16
24	8020254	8154793	NM_002504	NFX1	0.728821	1.216398e-18	2.107652e-14	8.781883e-16
25	8020254	8042720	NM_006429	CCT7	0.728198	1.344844e-18	2.330212e-14	9.320847e-16
26	8020254	7996860	NM_024562	TMCO7	0.727522	1.499228e-18	2.597712e-14	9.991201e-16
27	8020254	7910752	NM_000254	MTR	0.727194	1.580388e-18	2.738338e-14	1.014199e-15
28	8020254	7950644	NM_004549	NDUFC2	0.727055	1.616052e-18	2.800134e-14	1.000048e-15
29	8020254	7925364	NM_018072	HEATR1	0.726936	1.647105e-18	2.853938e-14	9.841167e-16
30	8020254	7902874	NM_032270	LRRC8C	0.725764	1.985871e-18	3.440918e-14	1.146973e-15
31	8020254	8023063	NM_001001937	ATP5A1	0.725449	2.088145e-18	3.618129e-14	1.167138e-15
32	8020254	8158714	NM_014285	EXOSC2	0.724926	2.269065e-18	3.931609e-14	1.228628e-15
33	8020254	8043251	NM_017952	PTCD3	0.723007	3.073100e-18	5.324761e-14	1.613564e-15
34	8020254	8145782	NM_032509	MAK16	0.722637	3.257205e-18	5.643759e-14	1.659929e-15
35	8020254	8136539	NM_016019	LUC7L2	0.721258	4.042451e-18	7.004354e-14	2.001244e-15
36	8020254	7995421	NM_031490	LONP2	0.720509	4.542815e-18	7.871336e-14	2.186482e-15
37	8020254	7920047	NM_031420	MRPL9	0.720126	4.821874e-18	8.354862e-14	2.258071e-15
38	8020254	8114396	NM_004661	CDC23	0.720033	4.891901e-18	8.476197e-14	2.230578e-15
39	8020254	8162313	NM_013417	IARS	0.719782	5.086873e-18	8.814024e-14	2.260006e-15
40	8020254	8140730	NM_024315	C7orf23	0.716307	8.687212e-18	1.505233e-13	3.763083e-15
41	8020254	8011275	NM_024086	METT10D	0.715475	9.863580e-18	1.709062e-13	4.168445e-15
42	8020254	8150089	NM_016127	TMEM66	0.714301	1.178857e-17	2.042605e-13	4.863346e-15
43	8020254	8137257	NM_018384	GIMAP5	0.713726	1.286065e-17	2.228365e-13	5.182244e-15
44	8020254	8136631	NM_003143	SSBP1	0.713247	1.382665e-17	2.395743e-13	5.444870e-15
45	8020254	7899774	NM_004964	HDAC1	0.712793	1.480495e-17	2.565254e-13	5.700564e-15
46	8020254	8164177	NM_001006617	MAPKAP1	0.712595	1.525395e-17	2.643052e-13	5.745766e-15
47	8020254	8096808	NM_017918	CCDC109B	0.712449	1.559216e-17	2.701654e-13	5.748201e-15
48	8020254	8092564	NM_004593	TRA2B	0.712050	1.655672e-17	2.868782e-13	5.976630e-15
49	8020254	8111814	NM_000997	RPL37	0.711510	1.795327e-17	3.110763e-13	6.348497e-15
50	8020254	7989834	AK296134	C15orf44	0.711227	1.872933e-17	3.245230e-13	6.490461e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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