[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6593	7975121	NM_002028	FNTB		farnesyltransferase, CAAX box, beta

Fetching correlation data, please wait...
Getting list of correlations for id 6593.
Getting list of p-values for id 6593.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7975121	8033300	NM_001080452	GPR108	0.651467	5.259869e-14	9.113775e-10	9.113775e-10
2	7975121	8002041	NM_004691	ATP6V0D1	0.643222	1.371769e-13	2.376865e-9	1.188432e-9
3	7975121	8087860	NM_007284	TWF2	0.631960	4.851652e-13	8.406457e-9	2.802152e-9
4	7975121	8170882	NM_001183	ATP6AP1	0.626610	8.684570e-13	1.504775e-8	3.761939e-9
5	7975121	8172333	NM_002621	CFP	0.625005	1.031985e-12	1.788121e-8	3.576241e-9
6	7975121	8035456	NM_145256	LRRC25	0.617476	2.287845e-12	3.964148e-8	6.606914e-9
7	7975121	8007620	NM_002087	GRN	0.612709	3.746656e-12	6.491830e-8	9.274043e-9
8	7975121	7994737	NM_000034	ALDOA	0.605345	7.899052e-12	1.368669e-7	1.710836e-8
9	7975121	7945666	NM_001909	CTSD	0.602211	1.078735e-11	1.869125e-7	2.076805e-8
10	7975121	7950473	NM_004041	ARRB1	0.599690	1.382685e-11	2.395778e-7	2.395778e-8
11	7975121	8036224	NM_003332	TYROBP	0.594655	2.255605e-11	3.908287e-7	3.552988e-8
12	7975121	7897745	NM_020350	AGTRAP	0.594245	2.346323e-11	4.065474e-7	3.387895e-8
13	7975121	8088106	NM_001135055	TKT	0.590087	3.490731e-11	6.048389e-7	4.652607e-8
14	7975121	7994769	NM_007074	CORO1A	0.586720	4.795448e-11	8.309073e-7	5.935052e-8
15	7975121	8004237	NM_001004333	RNASEK	0.580526	8.520363e-11	1.476323e-6	9.842156e-8
16	7975121	7948493	NM_016582	SLC15A3	0.580148	8.820870e-11	1.528392e-6	9.552450e-8
17	7975121	8001030	NM_013258	PYCARD	0.576727	1.204954e-10	2.087823e-6	1.228131e-7
18	7975121	7973306	NM_022060	ABHD4	0.573709	1.581934e-10	2.741018e-6	1.522788e-7
19	7975121	8118314	NM_005346	HSPA1B	0.572335	1.788949e-10	3.099712e-6	1.631427e-7
20	7975121	8053214	NM_181575	AUP1	0.570053	2.191783e-10	3.797702e-6	1.898851e-7
21	7975121	8035553	NM_007263	COPE	0.569202	2.363347e-10	4.094972e-6	1.949987e-7
22	7975121	7941936	NM_000852	GSTP1	0.568816	2.445318e-10	4.237002e-6	1.925910e-7
23	7975121	8178086	NM_005346	HSPA1B	0.568437	2.528249e-10	4.380697e-6	1.904651e-7
24	7975121	8179324	NM_005346	HSPA1B	0.568437	2.528249e-10	4.380697e-6	1.825290e-7
25	7975121	8086048	NM_001039770	TMPPE	0.567169	2.826799e-10	4.897995e-6	1.959198e-7
26	7975121	8126574	NM_015388	YIPF3	0.565335	3.318889e-10	5.750639e-6	2.211784e-7
27	7975121	8074349	NM_005137	DGCR2	0.561105	4.788153e-10	8.296433e-6	3.072753e-7
28	7975121	7915504	NM_022821	ELOVL1	0.560112	5.214602e-10	9.035341e-6	3.226907e-7
29	7975121	8030630	NM_007121	NR1H2	0.556982	6.810462e-10	1.180049e-5	4.069133e-7
30	7975121	7984217	NM_025201	PLEKHO2	0.556793	6.920608e-10	1.199134e-5	3.997112e-7
31	7975121	8055151	NM_001099771	POTEF	0.556573	7.050490e-10	1.221638e-5	3.940769e-7
32	7975121	8061966	NM_016732	RALY	0.555354	7.816236e-10	1.354319e-5	4.232248e-7
33	7975121	8076441	NM_145912	NFAM1	0.554945	8.090555e-10	1.401850e-5	4.248032e-7
34	7975121	7940711	NM_199337	TMEM179B	0.552912	9.597513e-10	1.662961e-5	4.891062e-7
35	7975121	7968126	NM_002339	LSP1	0.552793	9.694210e-10	1.679716e-5	4.799188e-7
36	7975121	7990417	NM_005697	SCAMP2	0.551384	1.090392e-9	1.889322e-5	5.248116e-7
37	7975121	7897877	NM_001066	TNFRSF1B	0.549289	1.297615e-9	2.248377e-5	6.076694e-7
38	7975121	8134814	NM_013439	PILRA	0.549065	1.321896e-9	2.290449e-5	6.027496e-7
39	7975121	8064522	NM_174856	IDH3B	0.548124	1.428575e-9	2.475292e-5	6.346902e-7
40	7975121	8176133	NM_000402	G6PD	0.547666	1.483537e-9	2.570524e-5	6.426310e-7
41	7975121	8003322	NM_000101	CYBA	0.547286	1.530652e-9	2.652161e-5	6.468685e-7
42	7975121	8179103	NM_005516	HLA-E	0.547152	1.547615e-9	2.681553e-5	6.384649e-7
43	7975121	8177788	NM_005516	HLA-E	0.547152	1.547615e-9	2.681553e-5	6.236169e-7
44	7975121	8055220	NM_001083538	POTEE	0.544008	2.001107e-9	3.467317e-5	7.880267e-7
45	7975121	8063078	NM_001127695	CTSA	0.543585	2.071113e-9	3.588617e-5	7.974704e-7
46	7975121	8075910	NM_002872	RAC2	0.543527	2.080774e-9	3.605357e-5	7.837732e-7
47	7975121	7977454	NM_001083538	POTEE	0.543301	2.119327e-9	3.672158e-5	7.813103e-7
48	7975121	8162438	NM_001003800	BICD2	0.542035	2.348079e-9	4.068517e-5	8.476077e-7
49	7975121	8061542	NM_178580	HM13	0.541847	2.384051e-9	4.130845e-5	8.430295e-7
50	7975121	8117890	NM_005516	HLA-E	0.540897	2.573784e-9	4.459595e-5	8.919191e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation