[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5015	8007148	NM_000805	GAST		gastrin

Fetching correlation data, please wait...
Getting list of correlations for id 5015.
Getting list of p-values for id 5015.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8007148	8139367	NM_013389	NPC1L1	0.715904	9.239042e-18	1.600849e-13	1.600849e-13
2	8007148	7920027	NM_007185	CELF3	0.698433	1.207506e-16	2.092246e-12	1.046123e-12
3	8007148	8067820	BC024764	IQSEC3	0.694267	2.169211e-16	3.758592e-12	1.252864e-12
4	8007148	8131056	NM_017781	CYP2W1	0.689761	4.042703e-16	7.004791e-12	1.751198e-12
5	8007148	7995340			0.689178	4.378628e-16	7.586849e-12	1.517370e-12
6	8007148	8010237	ENST00000340363		0.684546	8.195595e-16	1.420051e-11	2.366751e-12
7	8007148	8013042	NM_000422	KRT17	0.682375	1.095053e-15	1.897398e-11	2.710568e-12
8	8007148	7959402	NM_030765	B3GNT4	0.681761	1.188040e-15	2.058516e-11	2.573145e-12
9	8007148	8159624	BC052297	C9orf169	0.680968	1.319618e-15	2.286503e-11	2.540558e-12
10	8007148	8050253	ENST00000383906		0.679275	1.649316e-15	2.857770e-11	2.857770e-12
11	8007148	8119435	NM_004828	NCR2	0.677589	2.056705e-15	3.563653e-11	3.239685e-12
12	8007148	7949863	NM_005995	TBX10	0.676821	2.273049e-15	3.938512e-11	3.282094e-12
13	8007148	8035254	NM_031941	USHBP1	0.675645	2.647742e-15	4.587742e-11	3.529032e-12
14	8007148	8037422	NM_001031749	LYPD5	0.673103	3.673907e-15	6.365778e-11	4.546985e-12
15	8007148	8165639	BC052297	C9orf169	0.673034	3.706218e-15	6.421763e-11	4.281176e-12
16	8007148	8015189	NM_030966	KRTAP1-3	0.672596	3.920070e-15	6.792305e-11	4.245191e-12
17	8007148	8019585	NM_030966	KRTAP1-3	0.672596	3.920070e-15	6.792305e-11	3.995474e-12
18	8007148	8157804	NM_182487	OLFML2A	0.671368	4.585467e-15	7.945239e-11	4.414021e-12
19	8007148	7910265	NM_001098623	OBSCN	0.671030	4.787020e-15	8.294469e-11	4.365510e-12
20	8007148	7908812	NM_004767	GPR37L1	0.670551	5.086951e-15	8.814160e-11	4.407080e-12
21	8007148	7905507	NM_178428	LCE2A	0.668652	6.468044e-15	1.120718e-10	5.336753e-12
22	8007148	8068883	NM_000394	CRYAA	0.668357	6.713193e-15	1.163195e-10	5.287250e-12
23	8007148	8062527	NM_001018082	ADIG	0.668056	6.972023e-15	1.208042e-10	5.252358e-12
24	8007148	8062864	NM_003881	WISP2	0.667169	7.792495e-15	1.350206e-10	5.625856e-12
25	8007148	7952227	NM_015645	C1QTNF5	0.666088	8.920091e-15	1.545584e-10	6.182337e-12
26	8007148	7999727	NM_001171	ABCC6	0.665222	9.936172e-15	1.721641e-10	6.621694e-12
27	8007148	7897469	NM_001130924	TMEM201	0.664432	1.096087e-14	1.899189e-10	7.034034e-12
28	8007148	8010768			0.664250	1.121007e-14	1.942368e-10	6.937029e-12
29	8007148	8087907	NM_020163	SEMA3G	0.663617	1.212456e-14	2.100822e-10	7.244213e-12
30	8007148	7959772	NM_006312	NCOR2	0.661638	1.546970e-14	2.680435e-10	8.934784e-12
31	8007148	8049166	NM_005199	CHRNG	0.661366	1.599309e-14	2.771122e-10	8.939104e-12
32	8007148	8029458	NM_001039213	CEACAM16	0.659991	1.892031e-14	3.278321e-10	1.024475e-11
33	8007148	8067551	ENST00000415185		0.658745	2.201615e-14	3.814739e-10	1.155981e-11
34	8007148	7985030	ENST00000428357		0.658677	2.219838e-14	3.846314e-10	1.131269e-11
35	8007148	8064242	NR_027686	NCRNA00176	0.657158	2.667382e-14	4.621773e-10	1.320507e-11
36	8007148	8153101	NM_152888	COL22A1	0.657049	2.702608e-14	4.682808e-10	1.300780e-11
37	8007148	8151619	NR_003594	REXO1L2P	0.656756	2.799937e-14	4.851452e-10	1.311203e-11
38	8007148	8159036	NM_139025	ADAMTS13	0.656507	2.885163e-14	4.999122e-10	1.315559e-11
39	8007148	8125038	NR_003673	LY6G6E	0.655973	3.076235e-14	5.330192e-10	1.366716e-11
40	8007148	8178582	NR_003673	LY6G6E	0.655973	3.076235e-14	5.330192e-10	1.332548e-11
41	8007148	8179810	NR_003673	LY6G6E	0.655973	3.076235e-14	5.330192e-10	1.300047e-11
42	8007148	8015206	NM_001123387	KRTAP2-1	0.655761	3.155430e-14	5.467413e-10	1.301765e-11
43	8007148	8125805	NM_000841	GRM4	0.655595	3.218915e-14	5.577415e-10	1.297073e-11
44	8007148	8063839	NM_198935	SS18L1	0.655442	3.278637e-14	5.680894e-10	1.291112e-11
45	8007148	8165406	NM_015392	NPDC1	0.654974	3.467627e-14	6.008357e-10	1.335190e-11
46	8007148	7978997	NM_198794	MAP4K5	-0.654751	3.561146e-14	6.170397e-10	1.341391e-11
47	8007148	8070786	NM_198688	KRTAP10-6	0.654286	3.764321e-14	6.522439e-10	1.387753e-11
48	8007148	7914350	NM_178865	SERINC2	0.653926	3.929776e-14	6.809122e-10	1.418567e-11
49	8007148	7936108	NM_001001412	CALHM1	0.653596	4.087143e-14	7.081793e-10	1.445264e-11
50	8007148	8084496	NM_003741	CHRD	0.653248	4.259760e-14	7.380886e-10	1.476177e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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