[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7383	8011671	NM_001122890	GGT6		gamma-glutamyltransferase 6

Fetching correlation data, please wait...
Getting list of correlations for id 7383.
Getting list of p-values for id 7383.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.165 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8011671	8110821	NM_001044	SLC6A3	0.788284	1.870930e-23	3.241760e-19	3.241760e-19
2	8011671	8067409	NM_005560	LAMA5	0.784126	4.542429e-23	7.870667e-19	3.935333e-19
3	8011671	8082928	NM_001002026	CLDN18	0.778855	1.359891e-22	2.356283e-18	7.854277e-19
4	8011671	8131056	NM_017781	CYP2W1	0.775983	2.440512e-22	4.228674e-18	1.057169e-18
5	8011671	7913450	NM_005529	HSPG2	0.771666	5.784975e-22	1.002363e-17	2.004725e-18
6	8011671	7927367	NM_001040084	ANXA8	0.764452	2.348011e-21	4.068398e-17	6.780664e-18
7	8011671	7896921	NM_152228	TAS1R3	0.761869	3.830680e-21	6.637420e-17	9.482028e-18
8	8011671	7970241	NM_000504	F10	0.760780	4.700175e-21	8.143993e-17	1.017999e-17
9	8011671	8170716	NM_005393	PLXNB3	0.760318	5.125025e-21	8.880131e-17	9.866812e-18
10	8011671	8116384	NM_175062	RASGEF1C	0.758400	7.321730e-21	1.268636e-16	1.268636e-17
11	8011671	7927307	NM_001630	ANXA8L2	0.755101	1.342015e-20	2.325309e-16	2.113917e-17
12	8011671	7896798	NM_032129	PLEKHN1	0.754364	1.534701e-20	2.659176e-16	2.215980e-17
13	8011671	8019331	NM_001145113	MYADML2	0.753394	1.829359e-20	3.169730e-16	2.438254e-17
14	8011671	7937560	NM_002457	MUC2	0.751803	2.436453e-20	4.221642e-16	3.015459e-17
15	8011671	8045336	NM_001508	GPR39	0.750862	2.883438e-20	4.996132e-16	3.330755e-17
16	8011671	8013042	NM_000422	KRT17	0.749698	3.547304e-20	6.146414e-16	3.841509e-17
17	8011671	8073941	ENST00000411210		0.748709	4.227050e-20	7.324210e-16	4.308359e-17
18	8011671	8019316	NM_006907	PYCR1	0.748105	4.702297e-20	8.147670e-16	4.526483e-17
19	8011671	8034747	ENST00000343945		0.743606	1.030783e-19	1.786038e-15	9.400201e-17
20	8011671	8166661	ENST00000327781		0.742893	1.165559e-19	2.019565e-15	1.009782e-16
21	8011671	8034151	NM_020812	DOCK6	0.741289	1.534616e-19	2.659030e-15	1.266205e-16
22	8011671	8046922	NM_000090	COL3A1	0.740757	1.680136e-19	2.911172e-15	1.323260e-16
23	8011671	7977216	NM_015656	KIF26A	0.739595	2.047090e-19	3.546992e-15	1.542171e-16
24	8011671	8066451	NM_182970	RIMS4	0.739570	2.055767e-19	3.562028e-15	1.484178e-16
25	8011671	8008201	NM_002507	NGFR	0.737919	2.716479e-19	4.706843e-15	1.882737e-16
26	8011671	8064242	NR_027686	NCRNA00176	0.737045	3.145519e-19	5.450241e-15	2.096247e-16
27	8011671	8153346	NM_023946	LYNX1	0.736554	3.415388e-19	5.917842e-15	2.191793e-16
28	8011671	7942123	NM_053056	CCND1	0.736148	3.654710e-19	6.332516e-15	2.261613e-16
29	8011671	7931519	NM_152643	KNDC1	0.736059	3.709104e-19	6.426765e-15	2.216126e-16
30	8011671	8067506	BC137326	C20orf151	0.735072	4.371086e-19	7.573780e-15	2.524593e-16
31	8011671	8028407	NM_000540	RYR1	0.734401	4.886132e-19	8.466201e-15	2.731032e-16
32	8011671	7931439	NM_006426	DPYSL4	0.734015	5.208051e-19	9.023990e-15	2.819997e-16
33	8011671	7910265	NM_001098623	OBSCN	0.733224	5.933998e-19	1.028184e-14	3.115709e-16
34	8011671	8125843	NM_012391	SPDEF	0.732738	6.426869e-19	1.113584e-14	3.275246e-16
35	8011671	8064031	NM_139317	BIRC7	0.732612	6.561947e-19	1.136989e-14	3.248539e-16
36	8011671	8067671	NM_080823	SRMS	0.732174	7.050346e-19	1.221613e-14	3.393371e-16
37	8011671	8028613	NM_172140	IL29	0.732094	7.143442e-19	1.237744e-14	3.345255e-16
38	8011671	8086985	NM_000094	COL7A1	0.731689	7.633297e-19	1.322621e-14	3.480582e-16
39	8011671	8016382	NM_199262	SP6	0.731492	7.882599e-19	1.365818e-14	3.502097e-16
40	8011671	7950555	NM_001128922	LRRC32	0.731295	8.141266e-19	1.410637e-14	3.526593e-16
41	8011671	8000467	NM_001109763	GSG1L	0.731099	8.404590e-19	1.456263e-14	3.551862e-16
42	8011671	7963880	NM_001144996	ITGA7	0.731010	8.528405e-19	1.477717e-14	3.518373e-16
43	8011671	7987701	NM_016642	SPTBN5	0.730661	9.027324e-19	1.564164e-14	3.637592e-16
44	8011671	8084929	NM_152672	OSTalpha	0.730652	9.040457e-19	1.566440e-14	3.560091e-16
45	8011671	8137151	NM_198455	SSPO	0.729979	1.008465e-18	1.747368e-14	3.883039e-16
46	8011671	8018379	NM_020753	CASKIN2	0.729948	1.013521e-18	1.756128e-14	3.817670e-16
47	8011671	7946860	NM_000352	ABCC8	0.729727	1.050573e-18	1.820328e-14	3.873037e-16
48	8011671	8022952	NM_020180	CELF4	0.729701	1.055073e-18	1.828125e-14	3.808593e-16
49	8011671	7934367	NM_004034	ANXA7	-0.729556	1.080033e-18	1.871373e-14	3.819128e-16
50	8011671	8113981	NM_004199	P4HA2	0.729304	1.124999e-18	1.949285e-14	3.898570e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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