[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
1464	8125134	NM_005527	HSPA1L		heat shock 70kDa protein 1-like
1465	8178650	NM_005527	HSPA1L		heat shock 70kDa protein 1-like
1466	8179848	NM_005527	HSPA1L		heat shock 70kDa protein 1-like

Fetching correlation data, please wait...
Getting list of correlations for id 1464.
Getting list of p-values for id 1464.
1 of 3 done.
Getting list of correlations for id 1465.
Getting list of p-values for id 1465.
2 of 3 done.
Getting list of correlations for id 1466.
Getting list of p-values for id 1466.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.266 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179848	8178650	NM_005527	HSPA1L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179848	8125134	NM_005527	HSPA1L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8125134	8179848	NM_005527	HSPA1L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8125134	8178650	NM_005527	HSPA1L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8178650	8125134	NM_005527	HSPA1L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8178650	8179848	NM_005527	HSPA1L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8179848	8018288	NM_006356	ATP5H	0.734556	4.761585e-19	2.475119e-14	3.535885e-15
8	8178650	8018288	NM_006356	ATP5H	0.734556	4.761585e-19	2.475119e-14	3.093899e-15
9	8125134	8018288	NM_006356	ATP5H	0.734556	4.761585e-19	2.475119e-14	2.750133e-15
10	8125134	8081667	NM_017945	SLC35A5	0.717912	6.791547e-18	3.530314e-13	3.530314e-14
11	8178650	8081667	NM_017945	SLC35A5	0.717912	6.791547e-18	3.530314e-13	3.209376e-14
12	8179848	8081667	NM_017945	SLC35A5	0.717912	6.791547e-18	3.530314e-13	2.941928e-14
13	8178650	8174636	NM_006937	SUMO2	0.717179	7.601169e-18	3.951164e-13	3.039357e-14
14	8125134	8174636	NM_006937	SUMO2	0.717179	7.601169e-18	3.951164e-13	2.822260e-14
15	8179848	8174636	NM_006937	SUMO2	0.717179	7.601169e-18	3.951164e-13	2.634109e-14
16	8179848	8175360	NM_173470	MMGT1	0.713728	1.285816e-17	6.683799e-13	4.177374e-14
17	8178650	8175360	NM_173470	MMGT1	0.713728	1.285816e-17	6.683799e-13	3.931646e-14
18	8125134	8175360	NM_173470	MMGT1	0.713728	1.285816e-17	6.683799e-13	3.713221e-14
19	8178650	8178322	NM_006937	SUMO2	0.711732	1.736461e-17	9.026300e-13	4.750684e-14
20	8125134	8178322	NM_006937	SUMO2	0.711732	1.736461e-17	9.026300e-13	4.513150e-14
21	8179848	8178322	NM_006937	SUMO2	0.711732	1.736461e-17	9.026300e-13	4.298238e-14
22	8125134	7904695	NM_004892	SEC22B	0.696764	1.528730e-16	7.946493e-12	3.612042e-13
23	8179848	7904695	NM_004892	SEC22B	0.696764	1.528730e-16	7.946493e-12	3.454997e-13
24	8178650	7904695	NM_004892	SEC22B	0.696764	1.528730e-16	7.946493e-12	3.311039e-13
25	8178650	8018315	NM_006937	SUMO2	0.695059	1.941970e-16	1.009455e-11	4.037822e-13
26	8179848	8018315	NM_006937	SUMO2	0.695059	1.941970e-16	1.009455e-11	3.882521e-13
27	8125134	8018315	NM_006937	SUMO2	0.695059	1.941970e-16	1.009455e-11	3.738724e-13
28	8179848	8084092	NM_002492	NDUFB5	0.692909	2.620000e-16	1.361902e-11	4.863937e-13
29	8125134	8084092	NM_002492	NDUFB5	0.692909	2.620000e-16	1.361902e-11	4.696215e-13
30	8178650	8084092	NM_002492	NDUFB5	0.692909	2.620000e-16	1.361902e-11	4.539674e-13
31	8125134	8017421	NM_020198	CCDC47	0.689791	4.026321e-16	2.092922e-11	6.751362e-13
32	8178650	8017421	NM_020198	CCDC47	0.689791	4.026321e-16	2.092922e-11	6.540381e-13
33	8179848	8017421	NM_020198	CCDC47	0.689791	4.026321e-16	2.092922e-11	6.342188e-13
34	8125134	8135235	NM_004279	PMPCB	0.685638	7.076926e-16	3.678657e-11	1.081958e-12
35	8178650	8135235	NM_004279	PMPCB	0.685638	7.076926e-16	3.678657e-11	1.051045e-12
36	8179848	8135235	NM_004279	PMPCB	0.685638	7.076926e-16	3.678657e-11	1.021849e-12
37	8125134	8118667	ENST00000416347		0.684095	8.705481e-16	4.525196e-11	1.223026e-12
38	8179848	8118667	ENST00000416347		0.684095	8.705481e-16	4.525196e-11	1.190841e-12
39	8178650	8118667	ENST00000416347		0.684095	8.705481e-16	4.525196e-11	1.160307e-12
40	8178650	7943160	NR_002569	SCARNA9	0.683719	9.154648e-16	4.758678e-11	1.189669e-12
41	8179848	7943160	NR_002569	SCARNA9	0.683719	9.154648e-16	4.758678e-11	1.160653e-12
42	8125134	7943160	NR_002569	SCARNA9	0.683719	9.154648e-16	4.758678e-11	1.133018e-12
43	8179848	8140814	NM_018843	SLC25A40	0.682989	1.009113e-15	5.245470e-11	1.219877e-12
44	8178650	8140814	NM_018843	SLC25A40	0.682989	1.009113e-15	5.245470e-11	1.192152e-12
45	8125134	8140814	NM_018843	SLC25A40	0.682989	1.009113e-15	5.245470e-11	1.165660e-12
46	8125134	7907702	NM_003101	SOAT1	0.681999	1.151164e-15	5.983864e-11	1.300840e-12
47	8179848	7907702	NM_003101	SOAT1	0.681999	1.151164e-15	5.983864e-11	1.273163e-12
48	8178650	7907702	NM_003101	SOAT1	0.681999	1.151164e-15	5.983864e-11	1.246638e-12
49	8125134	8162294	NM_006415	SPTLC1	0.681075	1.301071e-15	6.763099e-11	1.380224e-12
50	8179848	8162294	NM_006415	SPTLC1	0.681075	1.301071e-15	6.763099e-11	1.352620e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation