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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 1465.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
1465 8178650 NM_005527 HSPA1L link to infopage heat shock 70kDa protein 1-like

Fetching correlation data, please wait...
Getting list of correlations for id 1465.
Getting list of p-values for id 1465.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178650 8179848 NM_005527 HSPA1L link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8178650 8125134 NM_005527 HSPA1L link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8178650 8018288 NM_006356 ATP5H link to infopage 0.734556 4.761585e-19 8.250398e-15 2.750133e-15
4 8178650 8081667 NM_017945 SLC35A5 link to infopage 0.717912 6.791547e-18 1.176771e-13 2.941928e-14
5 8178650 8174636 NM_006937 SUMO2 link to infopage 0.717179 7.601169e-18 1.317055e-13 2.634109e-14
6 8178650 8175360 NM_173470 MMGT1 link to infopage 0.713728 1.285816e-17 2.227933e-13 3.713221e-14
7 8178650 8178322 NM_006937 SUMO2 link to infopage 0.711732 1.736461e-17 3.008767e-13 4.298238e-14
8 8178650 7904695 NM_004892 SEC22B link to infopage 0.696764 1.528730e-16 2.648831e-12 3.311039e-13
9 8178650 8018315 NM_006937 SUMO2 link to infopage 0.695059 1.941970e-16 3.364851e-12 3.738724e-13
10 8178650 8084092 NM_002492 NDUFB5 link to infopage 0.692909 2.620000e-16 4.539674e-12 4.539674e-13
11 8178650 8017421 NM_020198 CCDC47 link to infopage 0.689791 4.026321e-16 6.976407e-12 6.342188e-13
12 8178650 8135235 NM_004279 PMPCB link to infopage 0.685638 7.076926e-16 1.226219e-11 1.021849e-12
13 8178650 8118667 ENST00000416347 link to infopage 0.684095 8.705481e-16 1.508399e-11 1.160307e-12
14 8178650 7943160 NR_002569 SCARNA9 link to infopage 0.683719 9.154648e-16 1.586226e-11 1.133018e-12
15 8178650 8140814 NM_018843 SLC25A40 link to infopage 0.682989 1.009113e-15 1.748490e-11 1.165660e-12
16 8178650 7907702 NM_003101 SOAT1 link to infopage 0.681999 1.151164e-15 1.994621e-11 1.246638e-12
17 8178650 8162294 NM_006415 SPTLC1 link to infopage 0.681075 1.301071e-15 2.254366e-11 1.326098e-12
18 8178650 7947015 NM_006292 TSG101 link to infopage 0.680878 1.335375e-15 2.313804e-11 1.285447e-12
19 8178650 8009205 NM_007372 DDX42 link to infopage 0.680359 1.430102e-15 2.477937e-11 1.304177e-12
20 8178650 8152096 NM_145690 YWHAZ link to infopage 0.680177 1.464782e-15 2.538028e-11 1.269014e-12
21 8178650 8040142 NM_016207 CPSF3 link to infopage 0.679822 1.535025e-15 2.659737e-11 1.266542e-12
22 8178650 8109732 NM_013283 MAT2B link to infopage 0.678651 1.790017e-15 3.101562e-11 1.409801e-12
23 8178650 8068168 NM_000454 SOD1 link to infopage 0.675579 2.670480e-15 4.627140e-11 2.011800e-12
24 8178650 8109462 NM_004779 CNOT8 link to infopage 0.675500 2.698084e-15 4.674970e-11 1.947904e-12
25 8178650 8085689 NM_014744 TBC1D5 link to infopage 0.674270 3.162082e-15 5.478939e-11 2.191576e-12
26 8178650 8064351 NM_177559 CSNK2A1 link to infopage 0.673865 3.331399e-15 5.772315e-11 2.220121e-12
27 8178650 8048847 NM_001135187 AGFG1 link to infopage 0.673086 3.681708e-15 6.379295e-11 2.362702e-12
28 8178650 7984289 NM_004663 RAB11A link to infopage 0.671914 4.277309e-15 7.411293e-11 2.646890e-12
29 8178650 7997230 NM_002811 PSMD7 link to infopage 0.671195 4.687165e-15 8.121451e-11 2.800500e-12
30 8178650 7926207 NM_006023 CDC123 link to infopage 0.670476 5.135671e-15 8.898577e-11 2.966192e-12
31 8178650 7978718 NM_006364 SEC23A link to infopage 0.670406 5.181644e-15 8.978234e-11 2.896205e-12
32 8178650 8112409 NM_019072 SGTB link to infopage 0.669929 5.504548e-15 9.537731e-11 2.980541e-12
33 8178650 8115181 NM_001135643 DCTN4 link to infopage 0.669807 5.590384e-15 9.686459e-11 2.935290e-12
34 8178650 8023605 NM_176787 PIGN link to infopage 0.669240 6.005834e-15 1.040631e-10 3.060679e-12
35 8178650 7973902 NM_003136 SRP54 link to infopage 0.669003 6.188091e-15 1.072211e-10 3.063459e-12
36 8178650 8035506 NM_004750 CRLF1 link to infopage -0.668452 6.632874e-15 1.149278e-10 3.192439e-12
37 8178650 7923798 NM_022731 NUCKS1 link to infopage 0.667889 7.119921e-15 1.233669e-10 3.334240e-12
38 8178650 8121277 NM_001624 AIM1 link to infopage 0.667474 7.500077e-15 1.299538e-10 3.419838e-12
39 8178650 7979931 NM_005466 MED6 link to infopage 0.667352 7.616278e-15 1.319673e-10 3.383776e-12
40 8178650 8002592 NM_001030007 AP1G1 link to infopage 0.666283 8.705944e-15 1.508479e-10 3.771197e-12
41 8178650 8122348 NM_016485 VTA1 link to infopage 0.664607 1.072556e-14 1.858418e-10 4.532727e-12
42 8178650 8069541 NM_022136 SAMSN1 link to infopage 0.661625 1.549298e-14 2.684468e-10 6.391592e-12
43 8178650 7938331 NM_003442 ZNF143 link to infopage 0.660736 1.727514e-14 2.993264e-10 6.961078e-12
44 8178650 8001410 NM_001012398 AKTIP link to infopage 0.660153 1.855118e-14 3.214363e-10 7.305370e-12
45 8178650 8128716 NM_006016 CD164 link to infopage 0.659938 1.904284e-14 3.299553e-10 7.332340e-12
46 8178650 8096808 NM_017918 CCDC109B link to infopage 0.658927 2.153575e-14 3.731500e-10 8.111957e-12
47 8178650 7999496 NM_014153 ZC3H7A link to infopage 0.658845 2.175092e-14 3.768782e-10 8.018685e-12
48 8178650 7920317 NM_004515 ILF2 link to infopage 0.657662 2.509881e-14 4.348871e-10 9.060149e-12
49 8178650 8127637 NM_018247 TMEM30A link to infopage 0.657561 2.540711e-14 4.402290e-10 8.984266e-12
50 8178650 7914015 NM_052943 FAM46B link to infopage -0.657412 2.586932e-14 4.482377e-10 8.964755e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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