[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5408	8120210	NM_002190	IL17A		interleukin 17A

Fetching correlation data, please wait...
Getting list of correlations for id 5408.
Getting list of p-values for id 5408.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8120210	8009602	NM_153209	KIF19	0.712780	1.483474e-17	2.570415e-13	2.570415e-13
2	8120210	8141648	NM_015831	ACHE	0.690898	3.458750e-16	5.992976e-12	2.996488e-12
3	8120210	8035398	NM_002866	RAB3A	0.687057	5.842893e-16	1.012398e-11	3.374660e-12
4	8120210	8097867	NM_015196	KIAA0922	-0.684234	8.544954e-16	1.480584e-11	3.701460e-12
5	8120210	7942693	NM_138706	B3GNT6	0.684178	8.609386e-16	1.491748e-11	2.983497e-12
6	8120210	8035648	NM_001001524	TM6SF2	0.683383	9.574896e-16	1.659042e-11	2.765070e-12
7	8120210	8113981	NM_004199	P4HA2	0.682245	1.114169e-15	1.930521e-11	2.757887e-12
8	8120210	8104998	NM_018034	WDR70	-0.681997	1.151536e-15	1.995267e-11	2.494084e-12
9	8120210	8029950	NM_014601	EHD2	0.679718	1.556137e-15	2.696319e-11	2.995910e-12
10	8120210	7960068	NM_024078	NOC4L	0.676019	2.522741e-15	4.371153e-11	4.371153e-12
11	8120210	7918300	NM_001032290	PSRC1	0.675592	2.666145e-15	4.619629e-11	4.199663e-12
12	8120210	8066451	NM_182970	RIMS4	0.675427	2.723489e-15	4.718990e-11	3.932492e-12
13	8120210	8105995	AK289851	SMA5	-0.675082	2.847728e-15	4.934258e-11	3.795583e-12
14	8120210	8074925	NR_024448	LOC91316	-0.674927	2.905447e-15	5.034268e-11	3.595906e-12
15	8120210	8013947	NM_032854	CORO6	0.673481	3.499884e-15	6.064248e-11	4.042832e-12
16	8120210	8150928	NM_003580	NSMAF	-0.672825	3.806854e-15	6.596136e-11	4.122585e-12
17	8120210	7998444	ENST00000440800		0.672704	3.866218e-15	6.698996e-11	3.940586e-12
18	8120210	7975725	NM_019589	YLPM1	-0.671904	4.282748e-15	7.420717e-11	4.122621e-12
19	8120210	8056909	NM_001880	ATF2	-0.671633	4.432852e-15	7.680802e-11	4.042527e-12
20	8120210	7977693	NM_020920	CHD8	-0.671607	4.448111e-15	7.707242e-11	3.853621e-12
21	8120210	7981217	NM_018036	ATG2B	-0.671150	4.714202e-15	8.168297e-11	3.889665e-12
22	8120210	8112121	NM_173514	SLC38A9	-0.669395	5.889576e-15	1.020487e-10	4.638576e-12
23	8120210	8157818	NM_001045476	WDR38	0.669261	5.989862e-15	1.037863e-10	4.512450e-12
24	8120210	8112558	NR_003504	GUSBL1	-0.668529	6.569276e-15	1.138258e-10	4.742743e-12
25	8120210	8112491	AK289851	SMA5	-0.668312	6.751312e-15	1.169800e-10	4.679199e-12
26	8120210	8105937	AK289851	SMA5	-0.667823	7.179183e-15	1.243937e-10	4.784373e-12
27	8120210	8072316	NM_001017437	CCDC157	0.667632	7.353364e-15	1.274117e-10	4.718953e-12
28	8120210	8009951	NM_000213	ITGB4	0.667620	7.364611e-15	1.276066e-10	4.557379e-12
29	8120210	8090044	NM_001031702	SEMA5B	0.667342	7.625451e-15	1.321262e-10	4.556075e-12
30	8120210	8151609	NM_172239	REXO1L1	0.667253	7.711552e-15	1.336181e-10	4.453936e-12
31	8120210	8111455	NR_003504	GUSBL1	-0.667005	7.954360e-15	1.378252e-10	4.445974e-12
32	8120210	7970241	NM_000504	F10	0.666956	8.003759e-15	1.386811e-10	4.333786e-12
33	8120210	7898296	BC017946	C1orf64	0.666202	8.794811e-15	1.523877e-10	4.617809e-12
34	8120210	8090639	NM_014602	PIK3R4	-0.664208	1.126849e-14	1.952491e-10	5.742620e-12
35	8120210	8067011	NM_015339	ADNP	-0.662734	1.351898e-14	2.342434e-10	6.692670e-12
36	8120210	8028407	NM_000540	RYR1	0.661577	1.558523e-14	2.700453e-10	7.501260e-12
37	8120210	8172197	NR_002191	PPP1R2P9	0.661522	1.569136e-14	2.718842e-10	7.348220e-12
38	8120210	7905025	NM_000798	DRD5	0.661312	1.609897e-14	2.789469e-10	7.340707e-12
39	8120210	8100902	NM_032217	ANKRD17	-0.661159	1.640340e-14	2.842217e-10	7.287736e-12
40	8120210	7915841	NM_001097611	KNCN	0.660199	1.844656e-14	3.196236e-10	7.990590e-12
41	8120210	7925531	NM_181690	AKT3	-0.660137	1.858618e-14	3.220428e-10	7.854703e-12
42	8120210	8053725	NM_000798	DRD5	0.659336	2.048974e-14	3.550257e-10	8.452993e-12
43	8120210	7946860	NM_000352	ABCC8	0.658666	2.222682e-14	3.851242e-10	8.956377e-12
44	8120210	8006865	NM_032192	PPP1R1B	0.658424	2.288868e-14	3.965921e-10	9.013456e-12
45	8120210	7947744	NM_002334	LRP4	0.658188	2.355409e-14	4.081217e-10	9.069372e-12
46	8120210	8052024	NM_025133	FBXO11	-0.657692	2.500899e-14	4.333308e-10	9.420234e-12
47	8120210	8034151	NM_020812	DOCK6	0.656355	2.938204e-14	5.091025e-10	1.083197e-11
48	8120210	8051882	NM_133259	LRPPRC	-0.655908	3.100486e-14	5.372211e-10	1.119211e-11
49	8120210	8153346	NM_023946	LYNX1	0.655522	3.247180e-14	5.626388e-10	1.148243e-11
50	8120210	8026198	NM_023072	ZSWIM4	0.655162	3.390395e-14	5.874538e-10	1.174908e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation