[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 5 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15327	8112491	AK289851	SMA5		glucuronidase, beta pseudogene
15432	8105937	AK289851	SMA5		glucuronidase, beta pseudogene
16519	8177544	AK289851	SMA5		glucuronidase, beta pseudogene
16574	8105995	AK289851	SMA5		glucuronidase, beta pseudogene
17048	8112560	AK289851	SMA5		glucuronidase, beta pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 15327.
Getting list of p-values for id 15327.
1 of 5 done.
Getting list of correlations for id 15432.
Getting list of p-values for id 15432.
2 of 5 done.
Getting list of correlations for id 16519.
Getting list of p-values for id 16519.
3 of 5 done.
Getting list of correlations for id 16574.
Getting list of p-values for id 16574.
4 of 5 done.
Getting list of correlations for id 17048.
Getting list of p-values for id 17048.
5 of 5 done.
Calculating corrections for multiple testing (n=86635), please wait...
Done; whole program took 0.504 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8112560	8105991	BC171739	GUSBL1	0.999018	2.981274e-141	2.582827e-136	2.582827e-136
2	8112491	8105937	AK289851	SMA5	0.997994	2.820607e-125	2.443633e-120	1.221816e-120
3	8105937	8112491	AK289851	SMA5	0.997994	2.820607e-125	2.443633e-120	8.145443e-121
4	8112560	8104621	NR_003660	GUSBL2	0.997681	4.870957e-122	4.219954e-117	1.054989e-117
5	8105995	8112558	NR_003504	GUSBL1	0.996358	5.851247e-112	5.069228e-107	1.013846e-107
6	8112560	8177669	BC171739	GUSBL1	0.994986	8.033823e-105	6.960102e-100	1.160017e-100
7	8105995	8074925	NR_024448	LOC91316	0.994629	2.733249e-103	2.367950e-98	3.382786e-99
8	8105995	8111455	NR_003504	GUSBL1	0.993343	1.676370e-98	1.452323e-93	1.815404e-94
9	8177544	8112564	BC171739	GUSBL1	0.991465	5.795171e-93	5.020647e-88	5.578496e-89
10	8177544	8112469	BC171739	GUSBL1	0.990971	1.035495e-91	8.971013e-87	8.971013e-88
11	8112491	8124469	BC171739	GUSBL1	0.983381	3.796513e-78	3.289109e-73	2.990099e-74
12	8177544	8177669	BC171739	GUSBL1	0.982903	1.615753e-77	1.399808e-72	1.166506e-73
13	8105937	8124469	BC171739	GUSBL1	0.978699	1.201027e-72	1.040509e-67	8.003919e-69
14	8112560	8112564	BC171739	GUSBL1	0.970645	1.461348e-65	1.266039e-60	9.043134e-62
15	8112560	8112469	BC171739	GUSBL1	0.969022	2.245426e-64	1.945325e-59	1.296883e-60
16	8177544	8105991	BC171739	GUSBL1	0.967352	3.214534e-63	2.784912e-58	1.740570e-59
17	8177544	8104621	NR_003660	GUSBL2	0.966801	7.508988e-63	6.505412e-58	3.826713e-59
18	8177544	8112560	AK289851	SMA5	0.966466	1.249011e-62	1.082081e-57	6.011560e-59
19	8112560	8177544	AK289851	SMA5	0.966466	1.249011e-62	1.082081e-57	5.695162e-59
20	8177544	8124469	BC171739	GUSBL1	0.962462	3.761322e-60	3.258621e-55	1.629311e-56
21	8105995	8105937	AK289851	SMA5	0.943640	2.869031e-51	2.485585e-46	1.183612e-47
22	8105937	8105995	AK289851	SMA5	0.943640	2.869031e-51	2.485585e-46	1.129811e-47
23	8105937	8074925	NR_024448	LOC91316	0.942092	1.113929e-50	9.650521e-46	4.195879e-47
24	8105995	8112491	AK289851	SMA5	0.941962	1.245476e-50	1.079018e-45	4.495909e-47
25	8112491	8105995	AK289851	SMA5	0.941962	1.245476e-50	1.079018e-45	4.316072e-47
26	8112491	8074925	NR_024448	LOC91316	0.941354	2.098218e-50	1.817791e-45	6.991504e-47
27	8105937	8112558	NR_003504	GUSBL1	0.938563	2.142408e-49	1.856075e-44	6.874351e-46
28	8105937	8111455	NR_003504	GUSBL1	0.937502	5.034943e-49	4.362023e-44	1.557865e-45
29	8112491	8112558	NR_003504	GUSBL1	0.937223	6.287262e-49	5.446969e-44	1.878265e-45
30	8112491	8111455	NR_003504	GUSBL1	0.936059	1.572092e-48	1.361982e-43	4.539939e-45
31	8112491	8177544	AK289851	SMA5	0.923399	1.247180e-44	1.080494e-39	3.485466e-41
32	8177544	8112491	AK289851	SMA5	0.923399	1.247180e-44	1.080494e-39	3.376545e-41
33	8177544	8105937	AK289851	SMA5	0.917782	4.128887e-43	3.577061e-38	1.083958e-39
34	8105937	8177544	AK289851	SMA5	0.917782	4.128887e-43	3.577061e-38	1.052077e-39
35	8105995	8124469	BC171739	GUSBL1	0.917060	6.360701e-43	5.510593e-38	1.574455e-39
36	8112491	8112469	BC171739	GUSBL1	0.904219	7.561848e-40	6.551207e-35	1.819780e-36
37	8112491	8112564	BC171739	GUSBL1	0.903306	1.203816e-39	1.042926e-34	2.818719e-36
38	8105937	8112469	BC171739	GUSBL1	0.900671	4.488027e-39	3.888202e-34	1.023211e-35
39	8105937	8112564	BC171739	GUSBL1	0.899523	7.872949e-39	6.820730e-34	1.748905e-35
40	8112560	8124469	BC171739	GUSBL1	0.879462	5.490584e-35	4.756767e-30	1.189192e-31
41	8105995	8139896	NR_022007	PMS2L4	0.868264	3.965458e-33	3.435474e-28	8.379205e-30
42	8105995	8133531	NR_027775	PMS2L5	0.865226	1.184020e-32	1.025775e-27	2.442322e-29
43	8105995	7900235	NM_012090	MACF1	0.864362	1.607951e-32	1.393048e-27	3.239647e-29
44	8105995	8014551	NM_007247	SYNRG	0.862945	2.645430e-32	2.291869e-27	5.208792e-29
45	8105995	8140258	NR_027775	PMS2L5	0.862131	3.512227e-32	3.042818e-27	6.761818e-29
46	8105995	8041283	NM_016252	BIRC6	0.862058	3.602518e-32	3.121041e-27	6.784873e-29
47	8105995	7972069	NM_015057	MYCBP2	0.861591	4.233455e-32	3.667654e-27	7.803519e-29
48	8105995	8168316	NM_181672	OGT	0.860202	6.823451e-32	5.911497e-27	1.231562e-28
49	8105995	8133754	NR_023383	PMS2L11	0.859462	8.782672e-32	7.608868e-27	1.552830e-28
50	8112491	8014551	NM_007247	SYNRG	0.859307	9.256791e-32	8.019621e-27	1.603924e-28

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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