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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 17048.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
17048 8112560 AK289851 SMA5 link to infopage glucuronidase, beta pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 17048.
Getting list of p-values for id 17048.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.089 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8112560 8105991 BC171739 GUSBL1 link to infopage 0.999018 2.981274e-141 5.165654e-137 5.165654e-137
2 8112560 8104621 NR_003660 GUSBL2 link to infopage 0.997681 4.870957e-122 8.439908e-118 4.219954e-118
3 8112560 8177669 BC171739 GUSBL1 link to infopage 0.994986 8.033823e-105 1.392020e-100 4.640068e-101
4 8112560 8112564 BC171739 GUSBL1 link to infopage 0.970645 1.461348e-65 2.532077e-61 6.330193e-62
5 8112560 8112469 BC171739 GUSBL1 link to infopage 0.969022 2.245426e-64 3.890650e-60 7.781300e-61
6 8112560 8177544 AK289851 SMA5 link to infopage 0.966466 1.249011e-62 2.164161e-58 3.606936e-59
7 8112560 8124469 BC171739 GUSBL1 link to infopage 0.879462 5.490584e-35 9.513535e-31 1.359076e-31
8 8112560 8112491 AK289851 SMA5 link to infopage 0.814915 3.819107e-26 6.617366e-22 8.271708e-23
9 8112560 8105937 AK289851 SMA5 link to infopage 0.809315 1.522331e-25 2.637742e-21 2.930825e-22
10 8112560 7900235 NM_012090 MACF1 link to infopage 0.678279 1.879493e-15 3.256597e-11 3.256597e-12
11 8112560 7944223 NM_005933 MLL link to infopage 0.663807 1.184233e-14 2.051920e-10 1.865382e-11
12 8112560 8105995 AK289851 SMA5 link to infopage 0.662371 1.413637e-14 2.449408e-10 2.041174e-11
13 8112560 8074925 NR_024448 LOC91316 link to infopage 0.661822 1.512399e-14 2.620534e-10 2.015796e-11
14 8112560 8112558 NR_003504 GUSBL1 link to infopage 0.659013 2.131091e-14 3.692542e-10 2.637530e-11
15 8112560 8111455 NR_003504 GUSBL1 link to infopage 0.658571 2.248454e-14 3.895896e-10 2.597264e-11
16 8112560 8085665 NM_015150 RFTN1 link to infopage 0.651455 5.267855e-14 9.127613e-10 5.704758e-11
17 8112560 8133309 NR_027775 PMS2L5 link to infopage 0.651357 5.328664e-14 9.232976e-10 5.431162e-11
18 8112560 8172119 NM_004229 MED14 link to infopage 0.647360 8.510663e-14 1.474643e-9 8.192459e-11
19 8112560 8132819 NM_006060 IKZF1 link to infopage 0.643124 1.387308e-13 2.403788e-9 1.265152e-10
20 8112560 7990487 NM_015477 SIN3A link to infopage 0.641911 1.593290e-13 2.760693e-9 1.380347e-10
21 8112560 7898070 NM_012231 PRDM2 link to infopage 0.641848 1.604828e-13 2.780685e-9 1.324136e-10
22 8112560 7994559 NR_003610 PDXDC2P link to infopage 0.639631 2.063804e-13 3.575953e-9 1.625433e-10
23 8112560 8133610 NM_001013739 STAG3L3 link to infopage 0.638990 2.218660e-13 3.844273e-9 1.671423e-10
24 8112560 8133531 NR_027775 PMS2L5 link to infopage 0.636614 2.896811e-13 5.019305e-9 2.091377e-10
25 8112560 8128956 NM_002037 FYN link to infopage 0.635565 3.256412e-13 5.642385e-9 2.256954e-10
26 8112560 8139977 NM_001013739 STAG3L3 link to infopage 0.633885 3.923850e-13 6.798856e-9 2.614944e-10
27 8112560 7975725 NM_019589 YLPM1 link to infopage 0.633430 4.126108e-13 7.149307e-9 2.647891e-10
28 8112560 8052803 NM_014911 AAK1 link to infopage 0.633196 4.234272e-13 7.336723e-9 2.620258e-10
29 8112560 8082086 NM_001113523 PARP15 link to infopage 0.632450 4.597248e-13 7.965652e-9 2.746776e-10
30 8112560 8164177 NM_001006617 MAPKAP1 link to infopage 0.632194 4.728316e-13 8.192753e-9 2.730918e-10
31 8112560 8140258 NR_027775 PMS2L5 link to infopage 0.631350 5.187403e-13 8.988213e-9 2.899424e-10
32 8112560 8140196 NM_001025202 STAG3L2 link to infopage 0.631289 5.222624e-13 9.049241e-9 2.827888e-10
33 8112560 7976876 NM_001376 DYNC1H1 link to infopage 0.631229 5.256795e-13 9.108449e-9 2.760136e-10
34 8112560 8134470 NM_003496 TRRAP link to infopage 0.630902 5.448569e-13 9.440735e-9 2.776687e-10
35 8112560 7925978 NM_017782 C10orf18 link to infopage 0.630900 5.450036e-13 9.443277e-9 2.698079e-10
36 8112560 8094501 NM_020860 STIM2 link to infopage 0.630881 5.460927e-13 9.462148e-9 2.628375e-10
37 8112560 7920000 NM_015100 POGZ link to infopage 0.629663 6.238385e-13 1.080925e-8 2.921419e-10
38 8112560 8014551 NM_007247 SYNRG link to infopage 0.626882 8.433514e-13 1.461275e-8 3.845461e-10
39 8112560 7989132 NM_022841 RFX7 link to infopage 0.626245 9.032801e-13 1.565113e-8 4.013111e-10
40 8112560 7999769 NM_006985 NPIP link to infopage 0.625348 9.947444e-13 1.723594e-8 4.308984e-10
41 8112560 8164607 NM_015033 FNBP1 link to infopage 0.625078 1.023995e-12 1.774276e-8 4.327503e-10
42 8112560 7907310 NM_015172 BAT2L2 link to infopage 0.625051 1.026979e-12 1.779446e-8 4.236776e-10
43 8112560 8133754 NR_023383 PMS2L11 link to infopage 0.624705 1.065690e-12 1.846520e-8 4.294233e-10
44 8112560 8085000 NM_032773 LRCH3 link to infopage 0.624613 1.076226e-12 1.864777e-8 4.238131e-10
45 8112560 7993359 NM_006985 NPIP link to infopage 0.623583 1.201370e-12 2.081613e-8 4.625807e-10
46 8112560 7997239 NR_003610 PDXDC2P link to infopage 0.623401 1.225014e-12 2.122582e-8 4.614308e-10
47 8112560 7993349 NM_006985 NPIP link to infopage 0.622562 1.339406e-12 2.320789e-8 4.937849e-10
48 8112560 8066786 NM_183047 ZMYND8 link to infopage 0.621336 1.525278e-12 2.642849e-8 5.505935e-10
49 8112560 7994026 NM_130464 NPIPL3 link to infopage 0.620966 1.586046e-12 2.748142e-8 5.608453e-10
50 8112560 7941563 ENST00000459039 link to infopage 0.620933 1.591610e-12 2.757783e-8 5.515566e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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