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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16519.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16519 8177544 AK289851 SMA5 link to infopage glucuronidase, beta pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 16519.
Getting list of p-values for id 16519.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8177544 8112564 BC171739 GUSBL1 link to infopage 0.991465 5.795171e-93 1.004129e-88 1.004129e-88
2 8177544 8112469 BC171739 GUSBL1 link to infopage 0.990971 1.035495e-91 1.794203e-87 8.971013e-88
3 8177544 8177669 BC171739 GUSBL1 link to infopage 0.982903 1.615753e-77 2.799616e-73 9.332052e-74
4 8177544 8105991 BC171739 GUSBL1 link to infopage 0.967352 3.214534e-63 5.569823e-59 1.392456e-59
5 8177544 8104621 NR_003660 GUSBL2 link to infopage 0.966801 7.508988e-63 1.301082e-58 2.602165e-59
6 8177544 8112560 AK289851 SMA5 link to infopage 0.966466 1.249011e-62 2.164161e-58 3.606936e-59
7 8177544 8124469 BC171739 GUSBL1 link to infopage 0.962462 3.761322e-60 6.517243e-56 9.310347e-57
8 8177544 8112491 AK289851 SMA5 link to infopage 0.923399 1.247180e-44 2.160989e-40 2.701236e-41
9 8177544 8105937 AK289851 SMA5 link to infopage 0.917782 4.128887e-43 7.154123e-39 7.949025e-40
10 8177544 8105995 AK289851 SMA5 link to infopage 0.798276 2.042389e-24 3.538847e-20 3.538847e-21
11 8177544 8074925 NR_024448 LOC91316 link to infopage 0.797300 2.549570e-24 4.417640e-20 4.016036e-21
12 8177544 8111455 NR_003504 GUSBL1 link to infopage 0.794491 4.794707e-24 8.307789e-20 6.923157e-21
13 8177544 8112558 NR_003504 GUSBL1 link to infopage 0.793880 5.494108e-24 9.519641e-20 7.322801e-21
14 8177544 7900235 NM_012090 MACF1 link to infopage 0.772944 4.489431e-22 7.778837e-18 5.556312e-19
15 8177544 8133309 NR_027775 PMS2L5 link to infopage 0.755620 1.220801e-20 2.115282e-16 1.410188e-17
16 8177544 8014551 NM_007247 SYNRG link to infopage 0.750959 2.833883e-20 4.910269e-16 3.068918e-17
17 8177544 8172119 NM_004229 MED14 link to infopage 0.745566 7.337408e-20 1.271353e-15 7.478545e-17
18 8177544 7944223 NM_005933 MLL link to infopage 0.745440 7.501211e-20 1.299735e-15 7.220749e-17
19 8177544 8133531 NR_027775 PMS2L5 link to infopage 0.745050 8.027553e-20 1.390934e-15 7.320705e-17
20 8177544 7981217 NM_018036 ATG2B link to infopage 0.744819 8.355758e-20 1.447802e-15 7.239011e-17
21 8177544 8168316 NM_181672 OGT link to infopage 0.740107 1.876807e-19 3.251943e-15 1.548544e-16
22 8177544 8140258 NR_027775 PMS2L5 link to infopage 0.739550 2.062685e-19 3.574014e-15 1.624552e-16
23 8177544 8094501 NM_020860 STIM2 link to infopage 0.738138 2.618290e-19 4.536711e-15 1.972483e-16
24 8177544 7990487 NM_015477 SIN3A link to infopage 0.737831 2.757126e-19 4.777272e-15 1.990530e-16
25 8177544 7915882 NM_014774 KIAA0494 link to infopage 0.736971 3.184973e-19 5.518603e-15 2.207441e-16
26 8177544 7925978 NM_017782 C10orf18 link to infopage 0.735503 4.069398e-19 7.051046e-15 2.711941e-16
27 8177544 8092035 NM_024947 PHC3 link to infopage 0.734576 4.746387e-19 8.224065e-15 3.045950e-16
28 8177544 7975725 NM_019589 YLPM1 link to infopage 0.733861 5.342189e-19 9.256411e-15 3.305861e-16
29 8177544 8133754 NR_023383 PMS2L11 link to infopage 0.733394 5.770080e-19 9.997818e-15 3.447524e-16
30 8177544 7907310 NM_015172 BAT2L2 link to infopage 0.731501 7.871011e-19 1.363810e-14 4.546034e-16
31 8177544 7920000 NM_015100 POGZ link to infopage 0.729891 1.023091e-18 1.772710e-14 5.718419e-16
32 8177544 8140239 NR_003613 PMS2L1 link to infopage 0.727009 1.627893e-18 2.820650e-14 8.814531e-16
33 8177544 8140269 NR_027775 PMS2L5 link to infopage 0.726421 1.788538e-18 3.099000e-14 9.390910e-16
34 8177544 8128956 NM_002037 FYN link to infopage 0.725926 1.935550e-18 3.353728e-14 9.863906e-16
35 8177544 8006850 NM_016507 CDK12 link to infopage 0.724630 2.378131e-18 4.120588e-14 1.177311e-15
36 8177544 8009382 NM_004459 BPTF link to infopage 0.724221 2.537208e-18 4.396221e-14 1.221172e-15
37 8177544 8164607 NM_015033 FNBP1 link to infopage 0.723110 3.023677e-18 5.239125e-14 1.415980e-15
38 8177544 8132819 NM_006060 IKZF1 link to infopage 0.721679 3.784598e-18 6.557574e-14 1.725677e-15
39 8177544 8085665 NM_015150 RFTN1 link to infopage 0.719737 5.122058e-18 8.874990e-14 2.275638e-15
40 8177544 8140280 NR_003614 PMS2L2 link to infopage 0.718514 6.188920e-18 1.072354e-13 2.680885e-15
41 8177544 8043937 NM_017546 C2orf29 link to infopage 0.718189 6.507340e-18 1.127527e-13 2.750065e-15
42 8177544 8082086 NM_001113523 PARP15 link to infopage 0.717772 6.938656e-18 1.202261e-13 2.862526e-15
43 8177544 8062492 NM_020336 RALGAPB link to infopage 0.717695 7.021204e-18 1.216564e-13 2.829219e-15
44 8177544 7928306 ENST00000363300 link to infopage 0.717595 7.130043e-18 1.235423e-13 2.807779e-15
45 8177544 7916443 NM_015306 USP24 link to infopage 0.716283 8.719440e-18 1.510817e-13 3.357372e-15
46 8177544 8142730 NM_176814 ZNF800 link to infopage 0.716117 8.942638e-18 1.549491e-13 3.368458e-15
47 8177544 7994559 NR_003610 PDXDC2P link to infopage 0.715483 9.851147e-18 1.706908e-13 3.631720e-15
48 8177544 8085000 NM_032773 LRCH3 link to infopage 0.715216 1.026039e-17 1.777817e-13 3.703785e-15
49 8177544 7941563 ENST00000459039 link to infopage 0.714349 1.170374e-17 2.027906e-13 4.138584e-15
50 8177544 8134180 NM_019004 ANKIB1 link to infopage 0.713896 1.253519e-17 2.171973e-13 4.343945e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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