[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3023	8162421	NM_022755	IPPK		inositol 1,3,4,5,6-pentakisphosphate 2-kinase

Fetching correlation data, please wait...
Getting list of correlations for id 3023.
Getting list of p-values for id 3023.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8162421	7905831	NM_025207	FLAD1	0.483528	1.741974e-7	3.018318e-3	3.018318e-3
2	8162421	8030321	NM_153329	ALDH16A1	0.479169	2.327342e-7	4.032585e-3	2.016293e-3
3	8162421	8159249	NM_016034	MRPS2	0.475877	2.888820e-7	5.005459e-3	1.668486e-3
4	8162421	7913990	NM_022078	GPATCH3	0.475043	3.050306e-7	5.285265e-3	1.321316e-3
5	8162421	8074498	NM_006440	TXNRD2	0.467796	4.864158e-7	8.428126e-3	1.685625e-3
6	8162421	8031522	NM_016535	ZNF581	0.460927	7.496790e-7	1.298969e-2	2.164948e-3
7	8162421	8037579	NM_202001	ERCC1	0.457588	9.219588e-7	1.597478e-2	2.282111e-3
8	8162421	8007637	NM_001466	FZD2	0.455503	1.047897e-6	1.815692e-2	2.269615e-3
9	8162421	8011062	NM_130766	INPP5K	0.447345	1.715740e-6	2.972863e-2	3.303181e-3
10	8162421	8033392	NM_020196	XAB2	0.445903	1.869524e-6	3.239325e-2	3.239325e-3
11	8162421	8134599	NM_006693	CPSF4	0.442706	2.258194e-6	3.912772e-2	3.557066e-3
12	8162421	8068938	NM_003683	RRP1	0.442247	2.319902e-6	4.019694e-2	3.349745e-3
13	8162421	8032637	NM_001080543	C19orf29	0.442001	2.353615e-6	4.078109e-2	3.137007e-3
14	8162421	8034565	NM_001375	DNASE2	0.441154	2.473392e-6	4.285646e-2	3.061176e-3
15	8162421	7911486	NM_017871	CPSF3L	0.441044	2.489355e-6	4.313306e-2	2.875537e-3
16	8162421	8071136	NM_001127649	PEX26	0.440929	2.506203e-6	4.342498e-2	2.714061e-3
17	8162421	8027006	NM_032627	SSBP4	0.438771	2.841879e-6	4.924123e-2	2.896543e-3
18	8162421	8007561	NM_138387	G6PC3	0.437683	3.026827e-6	5.244583e-2	2.913657e-3
19	8162421	8051028	ENST00000365142		0.435115	3.509595e-6	6.081075e-2	3.200566e-3
20	8162421	7910416	NM_014777	URB2	0.433667	3.812983e-6	6.606756e-2	3.303378e-3
21	8162421	8143863	NM_006712	FASTK	0.433504	3.848664e-6	6.668580e-2	3.175514e-3
22	8162421	8033233	NM_006087	TUBB4	0.432591	4.054133e-6	7.024597e-2	3.192998e-3
23	8162421	8032076	NM_194460	RNF126	0.431720	4.260014e-6	7.381326e-2	3.209272e-3
24	8162421	8023344	NM_001101654	CXXC1	0.431041	4.427141e-6	7.670907e-2	3.196211e-3
25	8162421	7941164	NM_004927	MRPL49	0.430938	4.453088e-6	7.715866e-2	3.086346e-3
26	8162421	7989975	NM_017882	CLN6	0.428392	5.140881e-6	8.907605e-2	3.426002e-3
27	8162421	8172453	NM_005834	TIMM17B	0.426165	5.823280e-6	1.009000e-1	3.737036e-3
28	8162421	7940717	NM_001012661	SLC3A2	0.425662	5.989014e-6	1.037716e-1	3.706130e-3
29	8162421	7992021	NM_005861	STUB1	0.424578	6.360995e-6	1.102170e-1	3.800585e-3
30	8162421	8139468	NM_004749	TBRG4	0.422373	7.185962e-6	1.245112e-1	4.150372e-3
31	8162421	8099029	NM_024309	TNIP2	0.422129	7.283154e-6	1.261952e-1	4.070813e-3
32	8162421	8011407	NM_014604	TAX1BP3	0.421858	7.392362e-6	1.280875e-1	4.002733e-3
33	8162421	7937813	NM_005706	TSSC4	0.421671	7.468838e-6	1.294126e-1	3.921593e-3
34	8162421	8001048	NM_003041	SLC5A2	0.421579	7.506948e-6	1.300729e-1	3.825673e-3
35	8162421	7992388	NM_012225	NUBP2	0.419770	8.289072e-6	1.436248e-1	4.103564e-3
36	8162421	8049237	ENST00000362911		0.418552	8.858588e-6	1.534928e-1	4.263688e-3
37	8162421	8034448	NM_016145	C19orf56	0.417872	9.192536e-6	1.592791e-1	4.304840e-3
38	8162421	8024829	NM_032868	MPND	0.417407	9.427391e-6	1.633484e-1	4.298642e-3
39	8162421	8167412	NM_005710	PQBP1	0.417332	9.465983e-6	1.640171e-1	4.205566e-3
40	8162421	7926084	NM_001001973	ATP5C1	-0.416381	9.965852e-6	1.726783e-1	4.316958e-3
41	8162421	8027100	NM_019070	DDX49	0.415929	1.021252e-5	1.769523e-1	4.315910e-3
42	8162421	7911862	NM_020710	LRRC47	0.413911	1.138370e-5	1.972453e-1	4.696317e-3
43	8162421	8066513	NM_002999	SDC4	0.413422	1.168590e-5	2.024816e-1	4.708875e-3
44	8162421	8010243	NM_004710	SYNGR2	0.413060	1.191472e-5	2.064463e-1	4.691962e-3
45	8162421	7986160	NM_001039675	UNC45A	0.410452	1.369038e-5	2.372132e-1	5.271404e-3
46	8162421	8037962	NM_019855	CABP5	0.410374	1.374732e-5	2.381998e-1	5.178258e-3
47	8162421	8159566	NM_016219	MAN1B1	0.410083	1.396105e-5	2.419030e-1	5.146873e-3
48	8162421	8120273	ENST00000384181		0.410047	1.398791e-5	2.423685e-1	5.049344e-3
49	8162421	8050894	NM_002254	KIF3C	0.409613	1.431279e-5	2.479978e-1	5.061179e-3
50	8162421	8033135	NM_002096	GTF2F1	0.409220	1.461369e-5	2.532115e-1	5.064229e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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