[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5587	8050894	NM_002254	KIF3C		kinesin family member 3C

Fetching correlation data, please wait...
Getting list of correlations for id 5587.
Getting list of p-values for id 5587.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8050894	8059028	NM_194302	CCDC108	0.617784	2.215646e-12	3.839050e-8	3.839050e-8
2	8050894	7960464	NM_000552	VWF	0.614916	2.984791e-12	5.171747e-8	2.585873e-8
3	8050894	8084219	NM_017644	KLHL24	-0.602951	1.002512e-11	1.737052e-7	5.790173e-8
4	8050894	7898377	NM_014675	CROCC	0.601905	1.111812e-11	1.926437e-7	4.816093e-8
5	8050894	7947969	NM_015308	FNBP4	-0.598009	1.629679e-11	2.823744e-7	5.647488e-8
6	8050894	7998679	NM_178167	ZNF598	0.595301	2.119201e-11	3.671939e-7	6.119898e-8
7	8050894	7945712	NM_199292	TH	0.592839	2.685456e-11	4.653090e-7	6.647272e-8
8	8050894	8029489	NM_005581	BCAM	0.592809	2.693065e-11	4.666273e-7	5.832841e-8
9	8050894	8145555	NM_016240	SCARA3	0.592336	2.817920e-11	4.882610e-7	5.425122e-8
10	8050894	8068512	NM_018962	DSCR6	0.591081	3.176274e-11	5.503529e-7	5.503529e-8
11	8050894	8065427	NM_178311	GGTLC1	0.587007	4.668142e-11	8.088490e-7	7.353173e-8
12	8050894	8115814	NM_001017995	SH3PXD2B	0.585198	5.528905e-11	9.579934e-7	7.983279e-8
13	8050894	7998367	NM_058192	RPUSD1	0.584809	5.733333e-11	9.934146e-7	7.641650e-8
14	8050894	7983663	NM_005154	USP8	-0.584739	5.770575e-11	9.998675e-7	7.141911e-8
15	8050894	8074316	NR_003267	GGT3P	0.584713	5.785055e-11	1.002376e-6	6.682510e-8
16	8050894	7947991	NM_015231	NUP160	-0.584322	5.999236e-11	1.039488e-6	6.496798e-8
17	8050894	8170786	AF514420	LCA10	0.584005	6.178360e-11	1.070525e-6	6.297203e-8
18	8050894	8062695	NM_006275	SRSF6	-0.583806	6.293766e-11	1.090521e-6	6.058449e-8
19	8050894	8004372	NM_003985	TNK1	0.582829	6.890192e-11	1.193864e-6	6.283492e-8
20	8050894	8038598	NM_016148	SHANK1	0.582378	7.184091e-11	1.244788e-6	6.223938e-8
21	8050894	8039484	NM_000641	IL11	0.582303	7.234032e-11	1.253441e-6	5.968766e-8
22	8050894	8107406	ENST00000410774		0.580585	8.473771e-11	1.468250e-6	6.673865e-8
23	8050894	8158987	NR_001275	CELP	0.579618	9.260160e-11	1.604508e-6	6.976121e-8
24	8050894	7975696	NM_182894	VSX2	0.579294	9.538070e-11	1.652661e-6	6.886089e-8
25	8050894	7906838	NM_014697	NOS1AP	0.579250	9.576503e-11	1.659321e-6	6.637282e-8
26	8050894	7897128	NM_080431	ACTRT2	0.578145	1.059327e-10	1.835496e-6	7.059600e-8
27	8050894	8065580	NM_080611	DUSP15	0.577451	1.128297e-10	1.955000e-6	7.240740e-8
28	8050894	8090639	NM_014602	PIK3R4	-0.576553	1.224091e-10	2.120983e-6	7.574940e-8
29	8050894	8012126	NM_001307	CLDN7	0.576034	1.282977e-10	2.223015e-6	7.665569e-8
30	8050894	7924884	NM_003493	HIST3H3	0.574561	1.465274e-10	2.538881e-6	8.462936e-8
31	8050894	8003926	NM_001136046	ZMYND15	0.574421	1.483905e-10	2.571162e-6	8.294071e-8
32	8050894	8032037	NM_012435	SHC2	0.574216	1.511530e-10	2.619028e-6	8.184464e-8
33	8050894	7991138	NM_021077	NMB	0.574030	1.537045e-10	2.663237e-6	8.070416e-8
34	8050894	8099926	NM_001100399	PDS5A	-0.573654	1.589775e-10	2.754603e-6	8.101773e-8
35	8050894	8130859	NM_214462	DACT2	0.573648	1.590661e-10	2.756139e-6	7.874683e-8
36	8050894	7920928	NM_024897	PAQR6	0.572127	1.822609e-10	3.158034e-6	8.772317e-8
37	8050894	8156415	NM_006648	WNK2	0.571932	1.854582e-10	3.213434e-6	8.684958e-8
38	8050894	7991602	NM_002570	PCSK6	0.571876	1.863765e-10	3.229346e-6	8.498279e-8
39	8050894	8136080	NM_005631	SMO	0.570427	2.120181e-10	3.673637e-6	9.419582e-8
40	8050894	8075992	NM_006941	SOX10	0.569468	2.308264e-10	3.999529e-6	9.998823e-8
41	8050894	8134981	NM_003302	TRIP6	0.569340	2.334591e-10	4.045147e-6	9.866211e-8
42	8050894	8139828	BC063653	LOC441239	0.568573	2.498153e-10	4.328549e-6	1.030607e-7
43	8050894	8028389	NM_001042522	SPRED3	0.568500	2.514253e-10	4.356445e-6	1.013127e-7
44	8050894	7910638	ENST00000410639		0.567641	2.711895e-10	4.698901e-6	1.067932e-7
45	8050894	8002029	NM_013304	ZDHHC1	0.567490	2.748224e-10	4.761847e-6	1.058188e-7
46	8050894	8000636	NM_130464	NPIPL3	-0.567019	2.864085e-10	4.962601e-6	1.078826e-7
47	8050894	8129901	NM_031922	REPS1	-0.566848	2.907510e-10	5.037843e-6	1.071881e-7
48	8050894	8177709	NM_206809	MOG	0.565622	3.236720e-10	5.608265e-6	1.168389e-7
49	8050894	8048541	NM_001927	DES	0.565046	3.403761e-10	5.897697e-6	1.203612e-7
50	8050894	8070795	NM_181686	KRTAP12-1	0.564835	3.466787e-10	6.006902e-6	1.201380e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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