[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1076	8135909	NM_000230	LEP		leptin

Fetching correlation data, please wait...
Getting list of correlations for id 1076.
Getting list of p-values for id 1076.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8135909	7928126	NM_014431	KIAA1274	0.779770	1.126549e-22	1.951972e-18	1.951972e-18
2	8135909	8032312	NM_138813	ATP8B3	0.766359	1.629254e-21	2.823008e-17	1.411504e-17
3	8135909	8029870	NM_002517	NPAS1	0.751160	2.733652e-20	4.736600e-16	1.578867e-16
4	8135909	8025053	NM_003811	TNFSF9	0.748205	4.620521e-20	8.005976e-16	2.001494e-16
5	8135909	8118804	NM_020804	PACSIN1	0.747840	4.927298e-20	8.537530e-16	1.707506e-16
6	8135909	8125568	NM_080680	COL11A2	0.743215	1.102819e-19	1.910855e-15	3.184759e-16
7	8135909	7955305	NM_001652	AQP6	0.742997	1.144911e-19	1.983788e-15	2.833982e-16
8	8135909	8154132	NR_026663	C9orf70	0.740967	1.621119e-19	2.808912e-15	3.511140e-16
9	8135909	8159670	NM_006647	NOXA1	0.739230	2.177434e-19	3.772839e-15	4.192044e-16
10	8135909	7925250	NM_001098721	GNG4	0.739050	2.244881e-19	3.889705e-15	3.889705e-16
11	8135909	7955184	NM_006262	PRPH	0.737412	2.958249e-19	5.125759e-15	4.659781e-16
12	8135909	7937560	NM_002457	MUC2	0.735305	4.205663e-19	7.287153e-15	6.072627e-16
13	8135909	8159142	NM_000093	COL5A1	0.734929	4.476547e-19	7.756514e-15	5.966549e-16
14	8135909	8028407	NM_000540	RYR1	0.734457	4.840494e-19	8.387124e-15	5.990803e-16
15	8135909	7913450	NM_005529	HSPG2	0.733768	5.424518e-19	9.399062e-15	6.266042e-16
16	8135909	8112121	NM_173514	SLC38A9	-0.733302	5.858314e-19	1.015070e-14	6.344187e-16
17	8135909	7935983	NM_005029	PITX3	0.730769	8.869856e-19	1.536880e-14	9.040470e-16
18	8135909	7923372	NM_012396	PHLDA3	0.730603	9.111875e-19	1.578815e-14	8.771192e-16
19	8135909	7927367	NM_001040084	ANXA8	0.730403	9.414193e-19	1.631197e-14	8.585249e-16
20	8135909	7949843	NM_016366	CABP2	0.729736	1.049096e-18	1.817768e-14	9.088842e-16
21	8135909	7981447	NM_001100119	XRCC3	0.728164	1.352383e-18	2.343274e-14	1.115845e-15
22	8135909	8008201	NM_002507	NGFR	0.727532	1.497036e-18	2.593914e-14	1.179052e-15
23	8135909	7927307	NM_001630	ANXA8L2	0.727455	1.515656e-18	2.626176e-14	1.141816e-15
24	8135909	8032051	NM_182577	ODF3L2	0.727360	1.538839e-18	2.666347e-14	1.110978e-15
25	8135909	8096556	NM_015143	METAP1	-0.727251	1.565975e-18	2.713365e-14	1.085346e-15
26	8135909	7911941	NM_015557	CHD5	0.724807	2.312186e-18	4.006325e-14	1.540894e-15
27	8135909	8037513	NM_138568	EXOC3L2	0.724480	2.435250e-18	4.219558e-14	1.562799e-15
28	8135909	8153322	NM_015193	ARC	0.724327	2.494848e-18	4.322823e-14	1.543865e-15
29	8135909	8027040	NM_012109	TMEM59L	0.722217	3.479065e-18	6.028176e-14	2.078681e-15
30	8135909	8030721	NM_002975	CLEC11A	0.722065	3.562638e-18	6.172982e-14	2.057661e-15
31	8135909	8029624	ENST00000421905		0.719677	5.170047e-18	8.958140e-14	2.889722e-15
32	8135909	8030067	NM_004605	SULT2B1	0.719543	5.278448e-18	9.145967e-14	2.858115e-15
33	8135909	8024605	NM_021938	CELF5	0.718536	6.168766e-18	1.068862e-13	3.238976e-15
34	8135909	8162283	NM_004560	ROR2	0.718189	6.507382e-18	1.127534e-13	3.316277e-15
35	8135909	7906307	NM_018240	KIRREL	0.717928	6.774572e-18	1.173830e-13	3.353800e-15
36	8135909	8010673	NM_012140	SLC25A10	0.717168	7.614385e-18	1.319345e-13	3.664846e-15
37	8135909	8093807	NM_173660	DOK7	0.717025	7.782215e-18	1.348424e-13	3.644390e-15
38	8135909	7977418	NM_001134875	C14orf80	0.716642	8.252516e-18	1.429913e-13	3.762930e-15
39	8135909	7915297	NM_001852	COL9A2	0.715943	9.183345e-18	1.591198e-13	4.079995e-15
40	8135909	8015323	NM_153490	KRT13	0.715625	9.639972e-18	1.670318e-13	4.175795e-15
41	8135909	8170648	NM_001711	BGN	0.715598	9.680073e-18	1.677266e-13	4.090893e-15
42	8135909	7991939	NM_145294	WDR90	0.715356	1.004290e-17	1.740134e-13	4.143176e-15
43	8135909	8110382	NM_030567	PRR7	0.714838	1.086633e-17	1.882809e-13	4.378626e-15
44	8135909	8022952	NM_020180	CELF4	0.714809	1.091413e-17	1.891092e-13	4.297936e-15
45	8135909	7936762	NM_001001976	ATE1	-0.714613	1.124375e-17	1.948204e-13	4.329343e-15
46	8135909	7997801	NM_013278	IL17C	0.714263	1.185657e-17	2.054387e-13	4.466059e-15
47	8135909	8137783	NM_001097620	TMEM184A	0.714238	1.190227e-17	2.062307e-13	4.387887e-15
48	8135909	8008228	NM_138281	DLX4	0.713869	1.258641e-17	2.180848e-13	4.543433e-15
49	8135909	7992845	NM_003456	ZNF205	0.713454	1.340155e-17	2.322086e-13	4.738951e-15
50	8135909	8018220	NM_000835	GRIN2C	0.713185	1.395648e-17	2.418239e-13	4.836478e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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Remove	"self correlations", i.e. correlations of a variable with itself
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