[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4238	8125125	NM_021177	LSM2		LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
4239	8178641	NM_021177	LSM2		LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
4240	8179839	NM_021177	LSM2		LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 4238.
Getting list of p-values for id 4238.
1 of 3 done.
Getting list of correlations for id 4239.
Getting list of p-values for id 4239.
2 of 3 done.
Getting list of correlations for id 4240.
Getting list of p-values for id 4240.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.229 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178641	8125125	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125125	8179839	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8125125	8178641	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8179839	8125125	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8179839	8178641	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8178641	8179839	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8179839	8141295	NM_004889	ATP5J2	0.609857	5.012612e-12	2.605606e-7	3.722294e-8
8	8178641	8141295	NM_004889	ATP5J2	0.609857	5.012612e-12	2.605606e-7	3.257007e-8
9	8125125	8141295	NM_004889	ATP5J2	0.609857	5.012612e-12	2.605606e-7	2.895117e-8
10	8179839	8096002	ENST00000459422		-0.586987	4.676693e-11	2.430992e-6	2.430992e-7
11	8125125	8096002	ENST00000459422		-0.586987	4.676693e-11	2.430992e-6	2.209992e-7
12	8178641	8096002	ENST00000459422		-0.586987	4.676693e-11	2.430992e-6	2.025826e-7
13	8125125	8028380	NM_002812	PSMD8	0.560955	4.850118e-10	2.521140e-5	1.939338e-6
14	8178641	8028380	NM_002812	PSMD8	0.560955	4.850118e-10	2.521140e-5	1.800814e-6
15	8179839	8028380	NM_002812	PSMD8	0.560955	4.850118e-10	2.521140e-5	1.680760e-6
16	8178641	8004247	NM_001142798	C17orf49	0.558724	5.871806e-10	3.052224e-5	1.907640e-6
17	8125125	8004247	NM_001142798	C17orf49	0.558724	5.871806e-10	3.052224e-5	1.795426e-6
18	8179839	8004247	NM_001142798	C17orf49	0.558724	5.871806e-10	3.052224e-5	1.695680e-6
19	8179839	8110166	NM_138820	HIGD2A	0.556827	6.900612e-10	3.587007e-5	1.887898e-6
20	8125125	8110166	NM_138820	HIGD2A	0.556827	6.900612e-10	3.587007e-5	1.793503e-6
21	8178641	8110166	NM_138820	HIGD2A	0.556827	6.900612e-10	3.587007e-5	1.708099e-6
22	8179839	8030364	NR_000019	SNORD34	0.554674	8.277927e-10	4.302949e-5	1.955886e-6
23	8125125	8030364	NR_000019	SNORD34	0.554674	8.277927e-10	4.302949e-5	1.870847e-6
24	8178641	8030364	NR_000019	SNORD34	0.554674	8.277927e-10	4.302949e-5	1.792895e-6
25	8179839	7905733	NM_006118	HAX1	0.553079	9.464237e-10	4.919605e-5	1.967842e-6
26	8125125	7905733	NM_006118	HAX1	0.553079	9.464237e-10	4.919605e-5	1.892156e-6
27	8178641	7905733	NM_006118	HAX1	0.553079	9.464237e-10	4.919605e-5	1.822076e-6
28	8125125	8115884	ENST00000459518		-0.549733	1.250779e-9	6.501676e-5	2.322027e-6
29	8179839	8115884	ENST00000459518		-0.549733	1.250779e-9	6.501676e-5	2.241957e-6
30	8178641	8115884	ENST00000459518		-0.549733	1.250779e-9	6.501676e-5	2.167225e-6
31	8125125	8002937			-0.549220	1.304992e-9	6.783479e-5	2.188219e-6
32	8179839	8002937			-0.549220	1.304992e-9	6.783479e-5	2.119837e-6
33	8178641	8002937			-0.549220	1.304992e-9	6.783479e-5	2.055600e-6
34	8179839	8034514	NM_024038	C19orf43	0.548580	1.375918e-9	7.152160e-5	2.103576e-6
35	8178641	8034514	NM_024038	C19orf43	0.548580	1.375918e-9	7.152160e-5	2.043474e-6
36	8125125	8034514	NM_024038	C19orf43	0.548580	1.375918e-9	7.152160e-5	1.986711e-6
37	8179839	7919971	NM_000449	RFX5	0.533235	4.732640e-9	2.460073e-4	6.648847e-6
38	8178641	7919971	NM_000449	RFX5	0.533235	4.732640e-9	2.460073e-4	6.473877e-6
39	8125125	7919971	NM_000449	RFX5	0.533235	4.732640e-9	2.460073e-4	6.307880e-6
40	8179839	7954063	NR_003932	RPL13AP20	0.531585	5.385384e-9	2.799377e-4	6.998442e-6
41	8178641	7954063	NR_003932	RPL13AP20	0.531585	5.385384e-9	2.799377e-4	6.827748e-6
42	8125125	7954063	NR_003932	RPL13AP20	0.531585	5.385384e-9	2.799377e-4	6.665182e-6
43	8179839	7935462	NM_016046	EXOSC1	0.531378	5.472929e-9	2.844883e-4	6.616007e-6
44	8125125	7935462	NM_016046	EXOSC1	0.531378	5.472929e-9	2.844883e-4	6.465644e-6
45	8178641	7935462	NM_016046	EXOSC1	0.531378	5.472929e-9	2.844883e-4	6.321963e-6
46	8179839	8143385	ENST00000365602		-0.530872	5.693010e-9	2.959283e-4	6.433225e-6
47	8178641	8143385	ENST00000365602		-0.530872	5.693010e-9	2.959283e-4	6.296348e-6
48	8125125	8143385	ENST00000365602		-0.530872	5.693010e-9	2.959283e-4	6.165174e-6
49	8179839	8156569	hsa-mir-23b		-0.528873	6.649256e-9	3.456350e-4	7.053775e-6
50	8178641	8156569	hsa-mir-23b		-0.528873	6.649256e-9	3.456350e-4	6.912699e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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