[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 4238.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4238	8125125	NM_021177	LSM2		LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 4238.
Getting list of p-values for id 4238.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125125	8179839	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125125	8178641	NM_021177	LSM2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8125125	8141295	NM_004889	ATP5J2	0.609857	5.012612e-12	8.685352e-8	2.895117e-8
4	8125125	8096002	ENST00000459422		-0.586987	4.676693e-11	8.103305e-7	2.025826e-7
5	8125125	8028380	NM_002812	PSMD8	0.560955	4.850118e-10	8.403799e-6	1.680760e-6
6	8125125	8004247	NM_001142798	C17orf49	0.558724	5.871806e-10	1.017408e-5	1.695680e-6
7	8125125	8110166	NM_138820	HIGD2A	0.556827	6.900612e-10	1.195669e-5	1.708099e-6
8	8125125	8030364	NR_000019	SNORD34	0.554674	8.277927e-10	1.434316e-5	1.792895e-6
9	8125125	7905733	NM_006118	HAX1	0.553079	9.464237e-10	1.639868e-5	1.822076e-6
10	8125125	8115884	ENST00000459518		-0.549733	1.250779e-9	2.167225e-5	2.167225e-6
11	8125125	8002937			-0.549220	1.304992e-9	2.261160e-5	2.055600e-6
12	8125125	8034514	NM_024038	C19orf43	0.548580	1.375918e-9	2.384053e-5	1.986711e-6
13	8125125	7919971	NM_000449	RFX5	0.533235	4.732640e-9	8.200245e-5	6.307880e-6
14	8125125	7954063	NR_003932	RPL13AP20	0.531585	5.385384e-9	9.331255e-5	6.665182e-6
15	8125125	7935462	NM_016046	EXOSC1	0.531378	5.472929e-9	9.482944e-5	6.321963e-6
16	8125125	8143385	ENST00000365602		-0.530872	5.693010e-9	9.864278e-5	6.165174e-6
17	8125125	8156569	hsa-mir-23b		-0.528873	6.649256e-9	1.152117e-4	6.777156e-6
18	8125125	7931977	NM_030569	ITIH5	-0.528610	6.785839e-9	1.175782e-4	6.532124e-6
19	8125125	7929243	NM_017838	NHP2	0.527030	7.665668e-9	1.328230e-4	6.990685e-6
20	8125125	8053214	NM_181575	AUP1	0.523786	9.825657e-9	1.702492e-4	8.512458e-6
21	8125125	8154359	AY779046	RPL18A	0.520247	1.284453e-8	2.225572e-4	1.059796e-5
22	8125125	8139758	NM_016139	CHCHD2	0.519932	1.315240e-8	2.278916e-4	1.035871e-5
23	8125125	8064218	NM_012469	PRPF6	0.518916	1.419497e-8	2.459562e-4	1.069375e-5
24	8125125	7949075	NM_016404	TRMT112	0.517257	1.606917e-8	2.784305e-4	1.160127e-5
25	8125125	8031536	NM_007279	U2AF2	0.517149	1.619909e-8	2.806816e-4	1.122727e-5
26	8125125	8082163	ENST00000384275		-0.517149	1.619993e-8	2.806963e-4	1.079601e-5
27	8125125	8087283	NM_005051	QARS	0.514761	1.934175e-8	3.351346e-4	1.241239e-5
28	8125125	7942267	NM_001012710	KRTAP5-10	-0.514406	1.985601e-8	3.440450e-4	1.228732e-5
29	8125125	8007641	ENST00000434166		-0.514302	2.000812e-8	3.466807e-4	1.195451e-5
30	8125125	8163960	NM_001004454	OR1L8	-0.514057	2.037435e-8	3.530264e-4	1.176755e-5
31	8125125	7899160	NM_001803	CD52	0.513932	2.056199e-8	3.562775e-4	1.149282e-5
32	8125125	7946676	ENST00000390835		-0.513311	2.152480e-8	3.729602e-4	1.165500e-5
33	8125125	8029884	NR_027280	SAE1	0.512880	2.221811e-8	3.849731e-4	1.166585e-5
34	8125125	8019578	NM_030967	KRTAP1-1	-0.512555	2.275566e-8	3.942873e-4	1.159669e-5
35	8125125	8015196	NM_030967	KRTAP1-1	-0.512555	2.275566e-8	3.942873e-4	1.126535e-5
36	8125125	7945645	NM_001005922	KRTAP5-1	-0.512024	2.365996e-8	4.099561e-4	1.138767e-5
37	8125125	8004784	NM_001141	ALOX15B	-0.511421	2.472748e-8	4.284530e-4	1.157981e-5
38	8125125	8178939	NM_005452	WDR46	0.511373	2.481416e-8	4.299550e-4	1.131461e-5
39	8125125	8125671	NM_005452	WDR46	0.511373	2.481416e-8	4.299550e-4	1.102449e-5
40	8125125	8032576	NM_198969	AES	0.510998	2.550453e-8	4.419169e-4	1.104792e-5
41	8125125	7964828	GENSCAN00000052941		0.509568	2.830691e-8	4.904739e-4	1.196278e-5
42	8125125	8139411	NM_182547	TMED4	0.508812	2.990563e-8	5.181748e-4	1.233749e-5
43	8125125	7939825	NM_004551	NDUFS3	0.508236	3.117956e-8	5.402483e-4	1.256391e-5
44	8125125	8043100	NM_021103	TMSB10	0.508097	3.149481e-8	5.457106e-4	1.240251e-5
45	8125125	8154838	ENST00000331828		-0.507832	3.210553e-8	5.562926e-4	1.236206e-5
46	8125125	7971858	ENST00000334406		0.505317	3.848059e-8	6.667532e-4	1.449463e-5
47	8125125	8118932	NM_022047	DEF6	0.504747	4.008592e-8	6.945687e-4	1.477806e-5
48	8125125	8072272	ENST00000364106		-0.503094	4.511000e-8	7.816210e-4	1.628377e-5
49	8125125	8007715	NM_021079	NMT1	0.502876	4.581633e-8	7.938596e-4	1.620122e-5
50	8125125	8073343	CR605850		0.502751	4.622329e-8	8.009110e-4	1.601822e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation