[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6328	8125671	NM_005452	WDR46		WD repeat domain 46
6329	8178939	NM_005452	WDR46		WD repeat domain 46

Fetching correlation data, please wait...
Getting list of correlations for id 6328.
Getting list of p-values for id 6328.
1 of 2 done.
Getting list of correlations for id 6329.
Getting list of p-values for id 6329.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.171 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125671	8178939	NM_005452	WDR46	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178939	8125671	NM_005452	WDR46	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178939	8165309	NM_003792	EDF1	0.673269	3.596291e-15	1.246259e-10	4.154195e-11
4	8125671	8165309	NM_003792	EDF1	0.673269	3.596291e-15	1.246259e-10	3.115646e-11
5	8125671	8019273	NM_005782	THOC4	0.666691	8.273521e-15	2.867106e-10	5.734212e-11
6	8178939	8019273	NM_005782	THOC4	0.666691	8.273521e-15	2.867106e-10	4.778510e-11
7	8178939	8028514	NM_013234	EIF3K	0.662411	1.406751e-14	4.874953e-10	6.964219e-11
8	8125671	8028514	NM_013234	EIF3K	0.662411	1.406751e-14	4.874953e-10	6.093692e-11
9	8125671	7949792	NM_005608	PTPRCAP	0.643214	1.373114e-13	4.758388e-9	5.287097e-10
10	8178939	7949792	NM_005608	PTPRCAP	0.643214	1.373114e-13	4.758388e-9	4.758388e-10
11	8125671	8019772	NM_005782	THOC4	0.636126	3.058972e-13	1.060056e-8	9.636873e-10
12	8178939	8019772	NM_005782	THOC4	0.636126	3.058972e-13	1.060056e-8	8.833800e-10
13	8178939	7913256	NM_005216	DDOST	0.636115	3.062880e-13	1.061410e-8	8.164695e-10
14	8125671	7913256	NM_005216	DDOST	0.636115	3.062880e-13	1.061410e-8	7.581503e-10
15	8125671	7899737	NM_003757	EIF3I	0.635607	3.241271e-13	1.123230e-8	7.488200e-10
16	8178939	7899737	NM_003757	EIF3I	0.635607	3.241271e-13	1.123230e-8	7.020187e-10
17	8125671	8073343	CR605850		0.629881	6.091714e-13	2.111022e-8	1.241778e-9
18	8178939	8073343	CR605850		0.629881	6.091714e-13	2.111022e-8	1.172790e-9
19	8125671	8153449	NM_032378	EEF1D	0.627397	7.977898e-13	2.764661e-8	1.455085e-9
20	8178939	8153449	NM_032378	EEF1D	0.627397	7.977898e-13	2.764661e-8	1.382330e-9
21	8125671	7978389	ENST00000423806		0.622903	1.291612e-12	4.475951e-8	2.131405e-9
22	8178939	7978389	ENST00000423806		0.622903	1.291612e-12	4.475951e-8	2.034523e-9
23	8125671	8134552	NM_005720	ARPC1B	0.622510	1.346829e-12	4.667301e-8	2.029261e-9
24	8178939	8134552	NM_005720	ARPC1B	0.622510	1.346829e-12	4.667301e-8	1.944709e-9
25	8178939	8178991	NM_001141969	DAXX	0.621505	1.498141e-12	5.191659e-8	2.076663e-9
26	8125671	8178991	NM_001141969	DAXX	0.621505	1.498141e-12	5.191659e-8	1.996792e-9
27	8125671	8119648	NM_057161	KLHDC3	0.616383	2.563817e-12	8.884650e-8	3.290611e-9
28	8178939	8119648	NM_057161	KLHDC3	0.616383	2.563817e-12	8.884650e-8	3.173089e-9
29	8125671	8030007	NM_001425	EMP3	0.615416	2.834275e-12	9.821897e-8	3.386861e-9
30	8178939	8030007	NM_001425	EMP3	0.615416	2.834275e-12	9.821897e-8	3.273966e-9
31	8125671	7941382	NM_182710	KAT5	0.613652	3.400688e-12	1.178474e-7	3.801530e-9
32	8178939	7941382	NM_182710	KAT5	0.613652	3.400688e-12	1.178474e-7	3.682732e-9
33	8125671	8172905	NM_004493	HSD17B10	0.613292	3.528859e-12	1.222891e-7	3.705730e-9
34	8178939	8172905	NM_004493	HSD17B10	0.613292	3.528859e-12	1.222891e-7	3.596738e-9
35	8125671	8060484	NR_027700	NOP56	0.608796	5.582021e-12	1.934393e-7	5.526839e-9
36	8178939	8060484	NR_027700	NOP56	0.608796	5.582021e-12	1.934393e-7	5.373315e-9
37	8125671	8116020	NM_006816	LMAN2	0.605367	7.881348e-12	2.731202e-7	7.381628e-9
38	8178939	8116020	NM_006816	LMAN2	0.605367	7.881348e-12	2.731202e-7	7.187375e-9
39	8125671	8177003	NM_001636	SLC25A6	0.604990	8.184144e-12	2.836133e-7	7.272137e-9
40	8178939	8177003	NM_001636	SLC25A6	0.604990	8.184144e-12	2.836133e-7	7.090333e-9
41	8178939	8171111	NM_001636	SLC25A6	0.604990	8.184144e-12	2.836133e-7	6.917398e-9
42	8125671	8171111	NM_001636	SLC25A6	0.604990	8.184144e-12	2.836133e-7	6.752698e-9
43	8125671	8180179	NM_001141969	DAXX	0.604009	9.024761e-12	3.127441e-7	7.273118e-9
44	8178939	8180179	NM_001141969	DAXX	0.604009	9.024761e-12	3.127441e-7	7.107819e-9
45	8125671	7992987	NM_001127204	HMOX2	0.602033	1.097922e-11	3.804738e-7	8.454974e-9
46	8178939	7992987	NM_001127204	HMOX2	0.602033	1.097922e-11	3.804738e-7	8.271171e-9
47	8125671	7920903	NM_003145	SSR2	0.600779	1.242362e-11	4.305283e-7	9.160177e-9
48	8178939	7920903	NM_003145	SSR2	0.600779	1.242362e-11	4.305283e-7	8.969340e-9
49	8178939	8074969	NM_001355	DDT	0.599216	1.448355e-11	5.019129e-7	1.024312e-8
50	8125671	8074969	NM_001355	DDT	0.599216	1.448355e-11	5.019129e-7	1.003826e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation