[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
3277	8167673	NM_001098800	MAGED4		melanoma antigen family D, 4
3278	8172722	NM_001098800	MAGED4		melanoma antigen family D, 4

Fetching correlation data, please wait...
Getting list of correlations for id 3277.
Getting list of p-values for id 3277.
1 of 2 done.
Getting list of correlations for id 3278.
Getting list of p-values for id 3278.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.170 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172722	8167673	NM_001098800	MAGED4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8167673	8172722	NM_001098800	MAGED4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8172722	7968199	NM_001260	CDK8	-0.590797	3.262972e-11	1.130750e-6	3.769168e-7
4	8167673	7968199	NM_001260	CDK8	-0.590797	3.262972e-11	1.130750e-6	2.826876e-7
5	8167673	7946439	NM_020644	TMEM9B	-0.585919	5.168976e-11	1.791257e-6	3.582514e-7
6	8172722	7946439	NM_020644	TMEM9B	-0.585919	5.168976e-11	1.791257e-6	2.985428e-7
7	8167673	8145854	NM_007198	PROSC	-0.583395	6.538804e-11	2.265957e-6	3.237082e-7
8	8172722	8145854	NM_007198	PROSC	-0.583395	6.538804e-11	2.265957e-6	2.832447e-7
9	8172722	8085263	NM_018447	TMEM111	-0.583224	6.642704e-11	2.301963e-6	2.557736e-7
10	8167673	8085263	NM_018447	TMEM111	-0.583224	6.642704e-11	2.301963e-6	2.301963e-7
11	8167673	8062174	NM_198398	ERGIC3	-0.574528	1.469631e-10	5.092858e-6	4.629871e-7
12	8172722	8062174	NM_198398	ERGIC3	-0.574528	1.469631e-10	5.092858e-6	4.244049e-7
13	8172722	8155312	NM_024345	DCAF10	-0.568895	2.428201e-10	8.414687e-6	6.472836e-7
14	8167673	8155312	NM_024345	DCAF10	-0.568895	2.428201e-10	8.414687e-6	6.010491e-7
15	8172722	7968254	NM_152705	POLR1D	-0.553869	8.857562e-10	3.069500e-5	2.046333e-6
16	8167673	7968254	NM_152705	POLR1D	-0.553869	8.857562e-10	3.069500e-5	1.918437e-6
17	8172722	8161988	NM_013438	UBQLN1	-0.550912	1.134086e-9	3.930061e-5	2.311800e-6
18	8167673	8161988	NM_013438	UBQLN1	-0.550912	1.134086e-9	3.930061e-5	2.183367e-6
19	8172722	8159616	NM_001144026	NDOR1	0.549625	1.261958e-9	4.373191e-5	2.301679e-6
20	8167673	8159616	NM_001144026	NDOR1	0.549625	1.261958e-9	4.373191e-5	2.186595e-6
21	8167673	8039961	NR_024080	ACP1	-0.548608	1.372682e-9	4.756893e-5	2.265187e-6
22	8172722	8039961	NR_024080	ACP1	-0.548608	1.372682e-9	4.756893e-5	2.162224e-6
23	8172722	8174338	NM_024657	MORC4	0.548018	1.441169e-9	4.994227e-5	2.171403e-6
24	8167673	8174338	NM_024657	MORC4	0.548018	1.441169e-9	4.994227e-5	2.080928e-6
25	8172722	8169984	NM_000194	HPRT1	-0.545905	1.714145e-9	5.940200e-5	2.376080e-6
26	8167673	8169984	NM_000194	HPRT1	-0.545905	1.714145e-9	5.940200e-5	2.284692e-6
27	8167673	8062844	NM_024331	TTPAL	-0.538259	3.179745e-9	1.101909e-4	4.081143e-6
28	8172722	8062844	NM_024331	TTPAL	-0.538259	3.179745e-9	1.101909e-4	3.935388e-6
29	8172722	8087337	NM_002292	LAMB2	0.536009	3.802813e-9	1.317827e-4	4.544231e-6
30	8167673	8087337	NM_002292	LAMB2	0.536009	3.802813e-9	1.317827e-4	4.392756e-6
31	8167673	8081316	NM_006070	TFG	-0.535379	3.997051e-9	1.385138e-4	4.468188e-6
32	8172722	8081316	NM_006070	TFG	-0.535379	3.997051e-9	1.385138e-4	4.328557e-6
33	8167673	7997281	NM_018975	TERF2IP	-0.531351	5.484539e-9	1.900612e-4	5.759430e-6
34	8172722	7997281	NM_018975	TERF2IP	-0.531351	5.484539e-9	1.900612e-4	5.590035e-6
35	8172722	8122182	NM_004865	TBPL1	-0.531043	5.617823e-9	1.946800e-4	5.562287e-6
36	8167673	8122182	NM_004865	TBPL1	-0.531043	5.617823e-9	1.946800e-4	5.407779e-6
37	8167673	8106181	NM_001037637	BTF3	-0.530196	6.000791e-9	2.079514e-4	5.620308e-6
38	8172722	8106181	NM_001037637	BTF3	-0.530196	6.000791e-9	2.079514e-4	5.472405e-6
39	8167673	7906852	NM_175866	UHMK1	-0.529919	6.131459e-9	2.124796e-4	5.448194e-6
40	8172722	7906852	NM_175866	UHMK1	-0.529919	6.131459e-9	2.124796e-4	5.311989e-6
41	8167673	8091103	NM_006286	TFDP2	-0.528454	6.868457e-9	2.380195e-4	5.805354e-6
42	8172722	8091103	NM_006286	TFDP2	-0.528454	6.868457e-9	2.380195e-4	5.667132e-6
43	8167673	8144669	NM_004462	FDFT1	-0.527706	7.276437e-9	2.521576e-4	5.864131e-6
44	8172722	8144669	NM_004462	FDFT1	-0.527706	7.276437e-9	2.521576e-4	5.730855e-6
45	8167673	7917148	NM_022831	AIDA	-0.527241	7.541892e-9	2.613567e-4	5.807927e-6
46	8172722	7917148	NM_022831	AIDA	-0.527241	7.541892e-9	2.613567e-4	5.681668e-6
47	8172722	7958414	NM_014301	ISCU	-0.526428	8.028845e-9	2.782316e-4	5.919821e-6
48	8167673	7958414	NM_014301	ISCU	-0.526428	8.028845e-9	2.782316e-4	5.796491e-6
49	8172722	7964250	NM_006601	PTGES3	-0.526189	8.177525e-9	2.833840e-4	5.783346e-6
50	8167673	7964250	NM_006601	PTGES3	-0.526189	8.177525e-9	2.833840e-4	5.667679e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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