[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 3278.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3278	8172722	NM_001098800	MAGED4		melanoma antigen family D, 4

Fetching correlation data, please wait...
Getting list of correlations for id 3278.
Getting list of p-values for id 3278.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.105 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172722	8167673	NM_001098800	MAGED4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8172722	7968199	NM_001260	CDK8	-0.590797	3.262972e-11	5.653751e-7	2.826876e-7
3	8172722	7946439	NM_020644	TMEM9B	-0.585919	5.168976e-11	8.956284e-7	2.985428e-7
4	8172722	8145854	NM_007198	PROSC	-0.583395	6.538804e-11	1.132979e-6	2.832447e-7
5	8172722	8085263	NM_018447	TMEM111	-0.583224	6.642704e-11	1.150981e-6	2.301963e-7
6	8172722	8062174	NM_198398	ERGIC3	-0.574528	1.469631e-10	2.546429e-6	4.244049e-7
7	8172722	8155312	NM_024345	DCAF10	-0.568895	2.428201e-10	4.207343e-6	6.010491e-7
8	8172722	7968254	NM_152705	POLR1D	-0.553869	8.857562e-10	1.534750e-5	1.918437e-6
9	8172722	8161988	NM_013438	UBQLN1	-0.550912	1.134086e-9	1.965030e-5	2.183367e-6
10	8172722	8159616	NM_001144026	NDOR1	0.549625	1.261958e-9	2.186595e-5	2.186595e-6
11	8172722	8039961	NR_024080	ACP1	-0.548608	1.372682e-9	2.378446e-5	2.162224e-6
12	8172722	8174338	NM_024657	MORC4	0.548018	1.441169e-9	2.497113e-5	2.080928e-6
13	8172722	8169984	NM_000194	HPRT1	-0.545905	1.714145e-9	2.970100e-5	2.284692e-6
14	8172722	8062844	NM_024331	TTPAL	-0.538259	3.179745e-9	5.509543e-5	3.935388e-6
15	8172722	8087337	NM_002292	LAMB2	0.536009	3.802813e-9	6.589134e-5	4.392756e-6
16	8172722	8081316	NM_006070	TFG	-0.535379	3.997051e-9	6.925691e-5	4.328557e-6
17	8172722	7997281	NM_018975	TERF2IP	-0.531351	5.484539e-9	9.503060e-5	5.590035e-6
18	8172722	8122182	NM_004865	TBPL1	-0.531043	5.617823e-9	9.734002e-5	5.407779e-6
19	8172722	8106181	NM_001037637	BTF3	-0.530196	6.000791e-9	1.039757e-4	5.472405e-6
20	8172722	7906852	NM_175866	UHMK1	-0.529919	6.131459e-9	1.062398e-4	5.311989e-6
21	8172722	8091103	NM_006286	TFDP2	-0.528454	6.868457e-9	1.190098e-4	5.667132e-6
22	8172722	8144669	NM_004462	FDFT1	-0.527706	7.276437e-9	1.260788e-4	5.730855e-6
23	8172722	7917148	NM_022831	AIDA	-0.527241	7.541892e-9	1.306784e-4	5.681668e-6
24	8172722	7958414	NM_014301	ISCU	-0.526428	8.028845e-9	1.391158e-4	5.796491e-6
25	8172722	7964250	NM_006601	PTGES3	-0.526189	8.177525e-9	1.416920e-4	5.667679e-6
26	8172722	7973067	NM_000270	PNP	-0.524620	9.220777e-9	1.597684e-4	6.144939e-6
27	8172722	8064894	NM_152611	LRRN4	0.524504	9.302846e-9	1.611904e-4	5.970016e-6
28	8172722	8007141	NM_005801	EIF1	-0.524257	9.479288e-9	1.642476e-4	5.865986e-6
29	8172722	7969776	NR_026644	UBAC2	-0.523537	1.001400e-8	1.735125e-4	5.983190e-6
30	8172722	7969177	NR_002183	ST13P4	-0.522355	1.095443e-8	1.898074e-4	6.326912e-6
31	8172722	7967493	NM_006312	NCOR2	0.521898	1.133964e-8	1.964820e-4	6.338129e-6
32	8172722	8043310	NM_022780	RMND5A	-0.519464	1.362334e-8	2.360516e-4	7.376611e-6
33	8172722	8154523	NM_006570	RRAGA	-0.519021	1.408440e-8	2.440403e-4	7.395162e-6
34	8172722	8108847	NM_183401	RNF14	-0.517432	1.586108e-8	2.748249e-4	8.083085e-6
35	8172722	7947649	NM_000741	CHRM4	0.517150	1.619846e-8	2.806708e-4	8.019166e-6
36	8172722	8001477	NM_001144	AMFR	-0.517124	1.622999e-8	2.812170e-4	7.811584e-6
37	8172722	8029939	NM_015711	GLTSCR1	0.516939	1.645504e-8	2.851164e-4	7.705849e-6
38	8172722	7971350	NM_183422	TSC22D1	-0.516706	1.674228e-8	2.900934e-4	7.634038e-6
39	8172722	7928600	NM_001099692	EIF5AL1	-0.516462	1.704970e-8	2.954202e-4	7.574876e-6
40	8172722	8109697	NM_004060	CCNG1	-0.515303	1.858034e-8	3.219415e-4	8.048538e-6
41	8172722	8159732	NR_024341	FLJ40292	0.514731	1.938483e-8	3.358810e-4	8.192219e-6
42	8172722	8120251	NM_033480	FBXO9	-0.513676	2.095438e-8	3.630765e-4	8.644680e-6
43	8172722	7928630			-0.513604	2.106624e-8	3.650147e-4	8.488714e-6
44	8172722	8111331	NM_022130	GOLPH3	-0.513437	2.132736e-8	3.695392e-4	8.398619e-6
45	8172722	8156750	NM_006401	ANP32B	-0.513384	2.141083e-8	3.709854e-4	8.244120e-6
46	8172722	8084345	NM_004068	AP2M1	-0.512941	2.211985e-8	3.832706e-4	8.331970e-6
47	8172722	7940493	NM_145017	C11orf66	0.510103	2.722503e-8	4.717281e-4	1.003677e-5
48	8172722	8143296	NM_198508	KLRG2	0.509872	2.768818e-8	4.797532e-4	9.994858e-6
49	8172722	7974781	NM_021003	PPM1A	-0.509122	2.923978e-8	5.066376e-4	1.033954e-5
50	8172722	8083272	NM_004130	GYG1	-0.507085	3.388508e-8	5.871268e-4	1.174254e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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