[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
814	8131927	NM_016447	MPP6		membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)

Fetching correlation data, please wait...
Getting list of correlations for id 814.
Getting list of p-values for id 814.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8131927	8083757	NM_015938	NMD3	0.598682	1.526110e-11	2.644290e-7	2.644290e-7
2	8131927	8128429	NM_005190	CCNC	0.597930	1.642174e-11	2.845394e-7	1.422697e-7
3	8131927	7989347	NM_024611	NARG2	0.595923	1.995544e-11	3.457680e-7	1.152560e-7
4	8131927	8134079	NM_033107	GTPBP10	0.594049	2.391069e-11	4.143006e-7	1.035752e-7
5	8131927	8174340	NM_018301	RBM41	0.590407	3.386417e-11	5.867644e-7	1.173529e-7
6	8131927	7903908	NM_006090	CEPT1	0.581947	7.475259e-11	1.295238e-6	2.158730e-7
7	8131927	8147864	NM_014673	TTC35	0.577935	1.079780e-10	1.870935e-6	2.672764e-7
8	8131927	8128592	NM_004849	ATG5	0.576132	1.271661e-10	2.203407e-6	2.754259e-7
9	8131927	7916969	NM_005455	ZRANB2	0.566749	2.932825e-10	5.081706e-6	5.646340e-7
10	8131927	8022009	NM_022840	METTL4	0.566524	2.991268e-10	5.182970e-6	5.182970e-7
11	8131927	7903308	NM_019083	CCDC76	0.565842	3.175222e-10	5.501708e-6	5.001553e-7
12	8131927	7946635	NM_021211	ZBED5	0.564879	3.453480e-10	5.983845e-6	4.986537e-7
13	8131927	7951034	NR_002920	SNORA8	0.564823	3.470426e-10	6.013206e-6	4.625543e-7
14	8131927	8050443	NM_001142286	SMC6	0.563946	3.745607e-10	6.490013e-6	4.635724e-7
15	8131927	7926531	NM_178815	ARL5B	0.562829	4.126244e-10	7.149543e-6	4.766362e-7
16	8131927	7988605	NM_004236	COPS2	0.562798	4.137449e-10	7.168958e-6	4.480598e-7
17	8131927	7979260	NM_004124	GMFB	0.561474	4.638503e-10	8.037134e-6	4.727726e-7
18	8131927	8121031	NM_006416	SLC35A1	0.560940	4.856354e-10	8.414604e-6	4.674780e-7
19	8131927	7922268	NM_014970	KIFAP3	0.557589	6.468055e-10	1.120720e-5	5.898525e-7
20	8131927	8038949	NM_001136499	ZNF841	0.556110	7.332883e-10	1.270569e-5	6.352843e-7
21	8131927	7910099	NM_001130440	SRP9	0.554641	8.300864e-10	1.438291e-5	6.849003e-7
22	8131927	8046975	NM_032168	WDR75	0.552451	9.974960e-10	1.728361e-5	7.856188e-7
23	8131927	8111974	NM_006451	PAIP1	0.551745	1.058143e-9	1.833444e-5	7.971496e-7
24	8131927	8001876	NM_001018159	NAE1	0.551538	1.076498e-9	1.865248e-5	7.771867e-7
25	8131927	7926609	NM_005180	BMI1	0.551238	1.103790e-9	1.912536e-5	7.650146e-7
26	8131927	7902367	NM_000016	ACADM	0.549750	1.248961e-9	2.164074e-5	8.323361e-7
27	8131927	7976621	NM_003384	VRK1	0.549340	1.292175e-9	2.238951e-5	8.292411e-7
28	8131927	8131539	NM_018374	TMEM106B	0.549185	1.308841e-9	2.267829e-5	8.099388e-7
29	8131927	8035842	NM_003430	ZNF91	0.548985	1.330627e-9	2.305578e-5	7.950268e-7
30	8131927	7951325	NM_032299	DCUN1D5	0.548342	1.403207e-9	2.431337e-5	8.104455e-7
31	8131927	8044450	NM_198581	ZC3H6	0.547885	1.457087e-9	2.524695e-5	8.144178e-7
32	8131927	7989159	NM_017661	ZNF280D	0.547593	1.492438e-9	2.585947e-5	8.081084e-7
33	8131927	8052956	NM_015189	EXOC6B	0.546646	1.613279e-9	2.795329e-5	8.470694e-7
34	8131927	8120382	NM_001031623	ZNF451	0.546230	1.669232e-9	2.892277e-5	8.506699e-7
35	8131927	8152111	NM_001042510	ZNF706	0.546101	1.686944e-9	2.922967e-5	8.351335e-7
36	8131927	8098758	NM_133474	ZNF721	0.545891	1.716194e-9	2.973650e-5	8.260139e-7
37	8131927	8169683	NM_006777	ZBTB33	0.545397	1.786920e-9	3.096196e-5	8.368097e-7
38	8131927	7974146	NM_017922	PRPF39	0.543744	2.044442e-9	3.542405e-5	9.322119e-7
39	8131927	8090678	NM_007208	MRPL3	0.543723	2.047959e-9	3.548499e-5	9.098715e-7
40	8131927	7908178	NM_017673	C1orf26	0.543212	2.134692e-9	3.698780e-5	9.246950e-7
41	8131927	7903582	NM_001035006	RPL17	0.543205	2.135960e-9	3.700979e-5	9.026777e-7
42	8131927	8160151	NM_178566	ZDHHC21	0.543098	2.154529e-9	3.733153e-5	8.888460e-7
43	8131927	8089568	NM_138806	CD200R1	0.542955	2.179677e-9	3.776726e-5	8.783083e-7
44	8131927	8113157	NM_014639	TTC37	0.542786	2.209663e-9	3.828683e-5	8.701552e-7
45	8131927	8128522	NM_020771	HACE1	0.542727	2.220270e-9	3.847062e-5	8.549027e-7
46	8131927	8102171	NM_033115	TBCK	0.542129	2.330362e-9	4.037818e-5	8.777864e-7
47	8131927	7965022	NM_007043	KRR1	0.542010	2.352821e-9	4.076733e-5	8.673900e-7
48	8131927	8093336	NM_003441	ZNF141	0.541967	2.361006e-9	4.090915e-5	8.522739e-7
49	8131927	7946742	NM_024514	CYP2R1	0.541571	2.437774e-9	4.223931e-5	8.620268e-7
50	8131927	7903032	NM_007358	MTF2	0.540996	2.553460e-9	4.424380e-5	8.848759e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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