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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3623 8112857 NM_001010891 MTX3 link to infopage metaxin 3

Fetching correlation data, please wait...
Getting list of correlations for id 3623.
Getting list of p-values for id 3623.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8112857 7912852 NM_001412 EIF1AX link to infopage 0.779125 1.286503e-22 2.229123e-18 2.229123e-18
2 8112857 7953878 NM_001004419 CLEC2D link to infopage 0.777197 1.907855e-22 3.305740e-18 1.652870e-18
3 8112857 7917103 NM_015534 ZZZ3 link to infopage 0.769785 8.376145e-22 1.451335e-17 4.837782e-18
4 8112857 8027416 NM_003796 C19orf2 link to infopage 0.767119 1.407290e-21 2.438411e-17 6.096029e-18
5 8112857 8147156 NM_007013 WWP1 link to infopage 0.762510 3.394842e-21 5.882243e-17 1.176449e-17
6 8112857 8078270 NM_002948 RPL15 link to infopage 0.761458 4.139060e-21 7.171749e-17 1.195291e-17
7 8112857 8040386 NM_004939 DDX1 link to infopage 0.759300 6.195296e-21 1.073459e-16 1.533513e-17
8 8112857 7954613 NM_018318 CCDC91 link to infopage 0.759179 6.336858e-21 1.097987e-16 1.372484e-17
9 8112857 8041149 NM_015131 WDR43 link to infopage 0.758911 6.659557e-21 1.153901e-16 1.282113e-17
10 8112857 8046975 NM_032168 WDR75 link to infopage 0.757651 8.408615e-21 1.456961e-16 1.456961e-17
11 8112857 7913712 NM_006625 SRSF10 link to infopage 0.754887 1.395378e-20 2.417772e-16 2.197974e-17
12 8112857 8155946 NM_033305 VPS13A link to infopage 0.754751 1.430312e-20 2.478302e-16 2.065252e-17
13 8112857 8171747 NM_001412 EIF1AX link to infopage 0.754128 1.601695e-20 2.775256e-16 2.134813e-17
14 8112857 7957633 NM_006838 METAP2 link to infopage 0.751170 2.728830e-20 4.728244e-16 3.377317e-17
15 8112857 7967386 NM_022782 MPHOSPH9 link to infopage 0.750606 3.018061e-20 5.229394e-16 3.486263e-17
16 8112857 7925364 NM_018072 HEATR1 link to infopage 0.750094 3.306674e-20 5.729473e-16 3.580921e-17
17 8112857 8107942 NM_005732 RAD50 link to infopage 0.749753 3.513054e-20 6.087069e-16 3.580629e-17
18 8112857 8039947 NM_006625 SRSF10 link to infopage 0.748400 4.464074e-20 7.734902e-16 4.297168e-17
19 8112857 8111892 NM_000436 OXCT1 link to infopage 0.748135 4.678223e-20 8.105957e-16 4.266293e-17
20 8112857 8047097 NM_014905 GLS link to infopage 0.746791 5.924043e-20 1.026459e-15 5.132295e-17
21 8112857 7928300 NM_173473 ANAPC16 link to infopage 0.745869 6.959851e-20 1.205933e-15 5.742540e-17
22 8112857 7925130 NM_005646 TARBP1 link to infopage 0.745198 7.822660e-20 1.355432e-15 6.161056e-17
23 8112857 7986765 NM_000969 RPL5 link to infopage 0.745107 7.948020e-20 1.377153e-15 5.987623e-17
24 8112857 8084694 NM_001967 EIF4A2 link to infopage 0.744758 8.444702e-20 1.463213e-15 6.096723e-17
25 8112857 7932433 NM_182543 NSUN6 link to infopage 0.744622 8.647087e-20 1.498281e-15 5.993123e-17
26 8112857 8111629 NM_153485 NUP155 link to infopage 0.744413 8.964897e-20 1.553348e-15 5.974414e-17
27 8112857 8043251 NM_017952 PTCD3 link to infopage 0.744388 9.004266e-20 1.560169e-15 5.778404e-17
28 8112857 8047518 NM_015934 NOP58 link to infopage 0.744153 9.378227e-20 1.624965e-15 5.803448e-17
29 8112857 8097480 NM_057175 NAA15 link to infopage 0.743665 1.020328e-19 1.767923e-15 6.096287e-17
30 8112857 8051882 NM_133259 LRPPRC link to infopage 0.742666 1.212076e-19 2.100163e-15 7.000544e-17
31 8112857 7969881 NM_003291 TPP2 link to infopage 0.742217 1.309227e-19 2.268497e-15 7.317732e-17
32 8112857 8088219 NM_001112736 C3orf63 link to infopage 0.741488 1.483321e-19 2.570151e-15 8.031721e-17
33 8112857 8096808 NM_017918 CCDC109B link to infopage 0.741487 1.483488e-19 2.570439e-15 7.789210e-17
34 8112857 7995574 NM_002136 HNRNPA1 link to infopage 0.741254 1.543632e-19 2.674650e-15 7.866619e-17
35 8112857 7980891 NM_001128596 TC2N link to infopage 0.741126 1.577893e-19 2.734015e-15 7.811470e-17
36 8112857 8135235 NM_004279 PMPCB link to infopage 0.740394 1.787242e-19 3.096754e-15 8.602095e-17
37 8112857 8022814 NM_002136 HNRNPA1 link to infopage 0.739456 2.096007e-19 3.631752e-15 9.815546e-17
38 8112857 8152465 NM_003756 EIF3H link to infopage 0.739381 2.122742e-19 3.678075e-15 9.679146e-17
39 8112857 8034313 NR_002944 HNRPA1L-2 link to infopage 0.738820 2.333810e-19 4.043793e-15 1.036870e-16
40 8112857 7901804 NM_176877 INADL link to infopage 0.737353 2.987508e-19 5.176455e-15 1.294114e-16
41 8112857 7903281 NM_012243 SLC35A3 link to infopage 0.736722 3.320336e-19 5.753146e-15 1.403206e-16
42 8112857 8089584 NM_015412 C3orf17 link to infopage 0.736408 3.499163e-19 6.062999e-15 1.443571e-16
43 8112857 8122409 NM_003630 PEX3 link to infopage 0.736063 3.707051e-19 6.423208e-15 1.493769e-16
44 8112857 7970473 NM_022459 XPO4 link to infopage 0.735294 4.213081e-19 7.300005e-15 1.659092e-16
45 8112857 8131519 NM_014660 PHF14 link to infopage 0.735208 4.273840e-19 7.405283e-15 1.645618e-16
46 8112857 7916570 NM_145243 OMA1 link to infopage 0.734912 4.489126e-19 7.778309e-15 1.690937e-16
47 8112857 8063283 NM_001316 CSE1L link to infopage 0.734720 4.634084e-19 8.029478e-15 1.708400e-16
48 8112857 7966462 NM_024953 NAA25 link to infopage 0.734623 4.709087e-19 8.159435e-15 1.699882e-16
49 8112857 8046318 NM_025000 DCAF17 link to infopage 0.734547 4.769349e-19 8.263851e-15 1.686500e-16
50 8112857 7988713 NM_017672 TRPM7 link to infopage 0.734079 5.153302e-19 8.929127e-15 1.785825e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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