[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2149	8065372	NM_022080	NAPB		N-ethylmaleimide-sensitive factor attachment protein, beta

Fetching correlation data, please wait...
Getting list of correlations for id 2149.
Getting list of p-values for id 2149.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8065372	8097373	BC034253	C4orf29	0.804420	4.912917e-25	8.512611e-21	8.512611e-21
2	8065372	8091048	NR_023350	COPB2	0.800593	1.200454e-24	2.080026e-20	1.040013e-20
3	8065372	7908437	NM_024529	CDC73	0.800247	1.299994e-24	2.252499e-20	7.508331e-21
4	8065372	8095773	NM_003715	USO1	0.792874	6.866987e-24	1.189843e-19	2.974607e-20
5	8065372	8087951	NM_018165	PBRM1	0.790256	1.220088e-23	2.114046e-19	4.228093e-20
6	8065372	7968931	NM_031431	COG3	0.789054	1.584220e-23	2.744977e-19	4.574962e-20
7	8065372	7930956	NM_007190	SEC23IP	0.789049	1.586085e-23	2.748209e-19	3.926013e-20
8	8065372	7988713	NM_017672	TRPM7	0.787678	2.131902e-23	3.693947e-19	4.617433e-20
9	8065372	7984641	NM_005744	ARIH1	0.786900	2.519251e-23	4.365106e-19	4.850118e-20
10	8065372	8146243	NM_032410	HOOK3	0.786806	2.570549e-23	4.453990e-19	4.453990e-20
11	8065372	7999841	NM_015092	SMG1	0.785677	3.270606e-23	5.666979e-19	5.151799e-20
12	8065372	8084971	NM_152699	SENP5	0.784807	3.933314e-23	6.815252e-19	5.679377e-20
13	8065372	7957008	NM_007007	CPSF6	0.784285	4.392570e-23	7.611006e-19	5.854620e-20
14	8065372	7907492	NM_014857	RABGAP1L	0.784068	4.598239e-23	7.967368e-19	5.690977e-20
15	8065372	7932911	NM_004521	KIF5B	0.783329	5.371704e-23	9.307552e-19	6.205035e-20
16	8065372	8132070	NM_002047	GARS	0.781996	7.100642e-23	1.230328e-18	7.689552e-20
17	8065372	7978866	NM_004713	SDCCAG1	0.780684	9.326136e-23	1.615940e-18	9.505527e-20
18	8065372	8058428	NM_005006	NDUFS1	0.780005	1.073173e-22	1.859487e-18	1.033048e-19
19	8065372	8138670	NM_031243	HNRNPA2B1	0.779643	1.156372e-22	2.003646e-18	1.054550e-19
20	8065372	8044766	NM_016133	INSIG2	0.778793	1.377152e-22	2.386191e-18	1.193095e-19
21	8065372	8116664	NM_003913	PRPF4B	0.778614	1.428705e-22	2.475517e-18	1.178818e-19
22	8065372	8173713	NM_032121	MAGT1	0.778127	1.578309e-22	2.734736e-18	1.243062e-19
23	8065372	7903519	NM_018061	PRPF38B	0.778012	1.615920e-22	2.799905e-18	1.217350e-19
24	8065372	8052443	NM_014709	USP34	0.777556	1.773518e-22	3.072975e-18	1.280406e-19
25	8065372	8092849	NM_024524	ATP13A3	0.776787	2.073929e-22	3.593498e-18	1.437399e-19
26	8065372	7970546	NM_152726	EFHA1	0.775928	2.467620e-22	4.275646e-18	1.644479e-19
27	8065372	7989516	NM_003922	HERC1	0.775922	2.471045e-22	4.281580e-18	1.585770e-19
28	8065372	8097600	NM_003601	SMARCA5	0.775711	2.578668e-22	4.468058e-18	1.595735e-19
29	8065372	8134180	NM_019004	ANKIB1	0.775603	2.635038e-22	4.565731e-18	1.574390e-19
30	8065372	8084708	NR_002588	SNORA4	0.775476	2.703489e-22	4.684336e-18	1.561445e-19
31	8065372	7917156	NM_003902	FUBP1	0.775442	2.722236e-22	4.716819e-18	1.521555e-19
32	8065372	7913300	NM_016287	HP1BP3	0.775397	2.746931e-22	4.759607e-18	1.487377e-19
33	8065372	8017235	NM_006380	APPBP2	0.773984	3.647985e-22	6.320863e-18	1.915413e-19
34	8065372	7972190	NM_022118	RBM26	0.773878	3.726280e-22	6.456526e-18	1.898978e-19
35	8065372	7987325	NM_014691	AQR	0.773319	4.166440e-22	7.219190e-18	2.062626e-19
36	8065372	8079346	NM_014016	SACM1L	0.773116	4.338347e-22	7.517054e-18	2.088071e-19
37	8065372	7967420	NM_018183	SBNO1	0.772620	4.788150e-22	8.296428e-18	2.242278e-19
38	8065372	7907790	NM_014810	CEP350	0.772444	4.958586e-22	8.591741e-18	2.260985e-19
39	8065372	7978449	NM_015382	HECTD1	0.772022	5.391984e-22	9.342690e-18	2.395562e-19
40	8065372	7954969	NM_001114182	IRAK4	0.771570	5.896622e-22	1.021708e-17	2.554269e-19
41	8065372	8154531	NM_017925	DENND4C	0.771136	6.424156e-22	1.113114e-17	2.714911e-19
42	8065372	8094704	NM_005339	UBE2K	0.771134	6.425502e-22	1.113347e-17	2.650826e-19
43	8065372	8006377	NM_001098507	ZNF207	0.770863	6.778481e-22	1.174507e-17	2.731413e-19
44	8065372	7934812	NM_015045	WAPAL	0.770575	7.174291e-22	1.243089e-17	2.825203e-19
45	8065372	8105714	NM_139168	SFRS12	0.770109	7.860918e-22	1.362061e-17	3.026803e-19
46	8065372	8082607	NM_014382	ATP2C1	0.769583	8.714029e-22	1.509880e-17	3.282347e-19
47	8065372	8138581	NM_013293	TRA2A	0.769422	8.993650e-22	1.558330e-17	3.315595e-19
48	8065372	8016898	NM_001078166	SRSF1	0.768846	1.006360e-21	1.743720e-17	3.632750e-19
49	8065372	7933947	NM_022079	HERC4	0.768644	1.046894e-21	1.813952e-17	3.701944e-19
50	8065372	8046604	NM_003659	AGPS	0.768451	1.086950e-21	1.883358e-17	3.766716e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation