[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4897	8018209	NM_015654	NAT9		N-acetyltransferase 9 (GCN5-related, putative)

Fetching correlation data, please wait...
Getting list of correlations for id 4897.
Getting list of p-values for id 4897.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8018209	7985571	NR_026811	LOC80154	0.628564	7.030086e-13	1.218103e-8	1.218103e-8
2	8018209	7991159	NR_027001	LOC388152	0.572697	1.731992e-10	3.001023e-6	1.500511e-6
3	8018209	7991088	NR_027001	LOC388152	0.562008	4.429685e-10	7.675315e-6	2.558438e-6
4	8018209	8029996	BC043386	C19orf68	0.561683	4.555459e-10	7.893244e-6	1.973311e-6
5	8018209	7994967	NM_001099784	FBXL19	0.551575	1.073247e-9	1.859616e-5	3.719231e-6
6	8018209	8164481	NM_016390	C9orf114	0.546339	1.654381e-9	2.866545e-5	4.777575e-6
7	8018209	7995350			0.537064	3.497295e-9	6.059763e-5	8.656805e-6
8	8018209	8143661			0.533089	4.787158e-9	8.294709e-5	1.036839e-5
9	8018209	7995330			0.531099	5.593430e-9	9.691736e-5	1.076860e-5
10	8018209	7990952	NR_026811	LOC80154	0.530820	5.716235e-9	9.904520e-5	9.904520e-6
11	8018209	7985431	NR_026811	LOC80154	0.529406	6.380391e-9	1.105530e-4	1.005028e-5
12	8018209	7899790	NM_052841	TSSK3	0.526070	8.251967e-9	1.429818e-4	1.191515e-5
13	8018209	8030292	NM_014419	DKKL1	0.525049	8.923554e-9	1.546184e-4	1.189372e-5
14	8018209	7995336			0.524566	9.258532e-9	1.604226e-4	1.145876e-5
15	8018209	7932860			0.523088	1.036147e-8	1.795332e-4	1.196888e-5
16	8018209	7990902	NR_026811	LOC80154	0.520609	1.249967e-8	2.165818e-4	1.353636e-5
17	8018209	7991735	NM_024571	SNRNP25	0.517800	1.543192e-8	2.673889e-4	1.572876e-5
18	8018209	7931379	NM_002412	MGMT	0.516368	1.716857e-8	2.974798e-4	1.652666e-5
19	8018209	8076355	NM_002676	PMM1	0.514115	2.028632e-8	3.515011e-4	1.850006e-5
20	8018209	7991714			0.508996	2.950766e-8	5.112792e-4	2.556396e-5
21	8018209	8110104	ENST00000410179		0.506619	3.504373e-8	6.072028e-4	2.891442e-5
22	8018209	8052370	ENST00000365474		0.506500	3.534352e-8	6.123972e-4	2.783624e-5
23	8018209	8053998	NM_016466	ANKRD39	0.504877	3.971418e-8	6.881275e-4	2.991859e-5
24	8018209	8000616	NM_024816	RABEP2	0.503957	4.241584e-8	7.349393e-4	3.062247e-5
25	8018209	8028325	NM_033520	C19orf33	0.502990	4.544610e-8	7.874446e-4	3.149778e-5
26	8018209	8131155	NM_152558	IQCE	0.498060	6.437898e-8	1.115495e-3	4.290363e-5
27	8018209	7995320			0.496168	7.347999e-8	1.273188e-3	4.715510e-5
28	8018209	8064156	NM_032527	ZGPAT	0.495557	7.667178e-8	1.328492e-3	4.744614e-5
29	8018209	7915331			0.492474	9.490589e-8	1.644434e-3	5.670463e-5
30	8018209	7954434	ENST00000410223		0.491746	9.978130e-8	1.728911e-3	5.763035e-5
31	8018209	8071715			0.491488	1.015599e-7	1.759728e-3	5.676541e-5
32	8018209	8157324	NM_144488	RGS3	0.491220	1.034452e-7	1.792395e-3	5.601236e-5
33	8018209	8025051	NM_006087	TUBB4	0.490618	1.078026e-7	1.867895e-3	5.660289e-5
34	8018209	7911355	NM_177987	TUBB8	0.490219	1.107894e-7	1.919648e-3	5.646024e-5
35	8018209	8170622	NM_013364	PNMA3	0.490158	1.112456e-7	1.927553e-3	5.507295e-5
36	8018209	8058516			0.489652	1.151590e-7	1.995359e-3	5.542665e-5
37	8018209	7995338			0.488530	1.243081e-7	2.153886e-3	5.821315e-5
38	8018209	7984985	NM_001038640	GOLGA6A	0.486848	1.393282e-7	2.414140e-3	6.353001e-5
39	8018209	8024246	NM_017914	C19orf24	0.484771	1.602627e-7	2.776871e-3	7.120183e-5
40	8018209	8158177	NM_024112	C9orf16	0.484469	1.635450e-7	2.833743e-3	7.084359e-5
41	8018209	7995352			0.483038	1.800000e-7	3.118859e-3	7.606974e-5
42	8018209	8005699	NM_015510	DHRS7B	0.482285	1.892774e-7	3.279609e-3	7.808594e-5
43	8018209	7901445	BC057844		0.481502	1.994047e-7	3.455085e-3	8.035081e-5
44	8018209	8019010	NM_020649	CBX8	0.481346	2.014756e-7	3.490968e-3	7.934017e-5
45	8018209	7951966	NM_001127489	FXYD2	0.480458	2.137076e-7	3.702912e-3	8.228693e-5
46	8018209	7933945	ENST00000411165		0.479660	2.253034e-7	3.903832e-3	8.486592e-5
47	8018209	8048712	BC033986	LOC440934	0.478742	2.393837e-7	4.147801e-3	8.825109e-5
48	8018209	8074991	NM_001099781	GGT5	0.477332	2.626337e-7	4.550654e-3	9.480530e-5
49	8018209	8006119	hsa-mir-423		0.477191	2.650711e-7	4.592888e-3	9.373240e-5
50	8018209	8073623	NM_001044370	MPPED1	0.476097	2.847623e-7	4.934076e-3	9.868152e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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