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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
16648 8133518 NM_000265 NCF1 link to infopage neutrophil cytosolic factor 1
16665 8133314 NM_000265 NCF1 link to infopage neutrophil cytosolic factor 1
16673 8140227 NM_000265 NCF1 link to infopage neutrophil cytosolic factor 1

Fetching correlation data, please wait...
Getting list of correlations for id 16648.
Getting list of p-values for id 16648.
1 of 3 done.
Getting list of correlations for id 16665.
Getting list of p-values for id 16665.
2 of 3 done.
Getting list of correlations for id 16673.
Getting list of p-values for id 16673.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.193 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8133314 8140227 NM_000265 NCF1 link to infopage 0.999467 6.360959e-155 3.306490e-150 3.306490e-150
2 8140227 8133314 NM_000265 NCF1 link to infopage 0.999467 6.360959e-155 3.306490e-150 1.653245e-150
3 8140227 8133518 NM_000265 NCF1 link to infopage 0.999227 1.355151e-146 7.044211e-142 2.348070e-142
4 8133518 8140227 NM_000265 NCF1 link to infopage 0.999227 1.355151e-146 7.044211e-142 1.761053e-142
5 8133518 8133314 NM_000265 NCF1 link to infopage 0.998538 2.410442e-132 1.252972e-127 2.505944e-128
6 8133314 8133518 NM_000265 NCF1 link to infopage 0.998538 2.410442e-132 1.252972e-127 2.088287e-128
7 8140227 8115997 NM_001031677 RAB24 link to infopage 0.776523 2.187698e-22 1.137188e-17 1.624554e-18
8 8133314 8115997 NM_001031677 RAB24 link to infopage 0.774672 3.178214e-22 1.652067e-17 2.065084e-18
9 8133518 8115997 NM_001031677 RAB24 link to infopage 0.772872 4.554115e-22 2.367274e-17 2.630305e-18
10 8140227 7994659 NM_017458 MVP link to infopage 0.762365 3.488987e-21 1.813610e-16 1.813610e-17
11 8133314 7994659 NM_017458 MVP link to infopage 0.757797 8.184777e-21 4.254529e-16 3.867754e-17
12 8133314 7911600 NM_023018 NADK link to infopage 0.756149 1.108182e-20 5.760442e-16 4.800368e-17
13 8133518 7994659 NM_017458 MVP link to infopage 0.755047 1.355399e-20 7.045500e-16 5.419615e-17
14 8140227 7911600 NM_023018 NADK link to infopage 0.753276 1.868905e-20 9.714755e-16 6.939110e-17
15 8133518 7911600 NM_023018 NADK link to infopage 0.747515 5.217636e-20 2.712179e-15 1.808120e-16
16 8140227 8134814 NM_013439 PILRA link to infopage 0.746151 6.626436e-20 3.444488e-15 2.152805e-16
17 8133518 8134814 NM_013439 PILRA link to infopage 0.745362 7.603461e-20 3.952355e-15 2.324915e-16
18 8133314 8134814 NM_013439 PILRA link to infopage 0.742155 1.323060e-19 6.877398e-15 3.820777e-16
19 8140227 8030374 NM_004107 FCGRT link to infopage 0.728383 1.305552e-18 6.786388e-14 3.571783e-15
20 8133314 8030374 NM_004107 FCGRT link to infopage 0.723956 2.645664e-18 1.375243e-13 6.876214e-15
21 8133518 8030374 NM_004107 FCGRT link to infopage 0.723035 3.059509e-18 1.590363e-13 7.573159e-15
22 8140227 8177788 NM_005516 HLA-E link to infopage 0.713187 1.395295e-17 7.252884e-13 3.296765e-14
23 8140227 8179103 NM_005516 HLA-E link to infopage 0.713187 1.395295e-17 7.252884e-13 3.153428e-14
24 8140227 8117890 NM_005516 HLA-E link to infopage 0.711620 1.765908e-17 9.179367e-13 3.824736e-14
25 8133314 8177788 NM_005516 HLA-E link to infopage 0.710208 2.180604e-17 1.133500e-12 4.534000e-14
26 8133314 8179103 NM_005516 HLA-E link to infopage 0.710208 2.180604e-17 1.133500e-12 4.359615e-14
27 8133314 8117890 NM_005516 HLA-E link to infopage 0.708553 2.787914e-17 1.449186e-12 5.367354e-14
28 8140227 8072744 NM_013416 NCF4 link to infopage 0.708383 2.858923e-17 1.486097e-12 5.307489e-14
29 8133314 8072744 NM_013416 NCF4 link to infopage 0.706802 3.608662e-17 1.875819e-12 6.468340e-14
30 8133518 8179103 NM_005516 HLA-E link to infopage 0.706709 3.658138e-17 1.901537e-12 6.338456e-14
31 8133518 8177788 NM_005516 HLA-E link to infopage 0.706709 3.658138e-17 1.901537e-12 6.133990e-14
32 8133518 8072744 NM_013416 NCF4 link to infopage 0.706182 3.952391e-17 2.054492e-12 6.420289e-14
33 8133518 8117890 NM_005516 HLA-E link to infopage 0.704946 4.734171e-17 2.460870e-12 7.457181e-14
34 8140227 7994769 NM_007074 CORO1A link to infopage 0.704921 4.751720e-17 2.469992e-12 7.264681e-14
35 8140227 8032410 NM_130807 MOBKL2A link to infopage 0.703885 5.523482e-17 2.871161e-12 8.203318e-14
36 8140227 8114010 NM_002198 IRF1 link to infopage 0.702798 6.465279e-17 3.360717e-12 9.335324e-14
37 8133518 8114010 NM_002198 IRF1 link to infopage 0.701729 7.541648e-17 3.920224e-12 1.059520e-13
38 8133314 8032410 NM_130807 MOBKL2A link to infopage 0.701671 7.604829e-17 3.953066e-12 1.040281e-13
39 8133518 8032410 NM_130807 MOBKL2A link to infopage 0.700311 9.241596e-17 4.803874e-12 1.231763e-13
40 8133314 7994769 NM_007074 CORO1A link to infopage 0.700167 9.433530e-17 4.903643e-12 1.225911e-13
41 8133314 8114010 NM_002198 IRF1 link to infopage 0.699389 1.054064e-16 5.479132e-12 1.336374e-13
42 8140227 7955810 NM_018457 PRR13 link to infopage 0.698961 1.120217e-16 5.823001e-12 1.386429e-13
43 8133518 7994769 NM_007074 CORO1A link to infopage 0.698551 1.187373e-16 6.172084e-12 1.435368e-13
44 8140227 7998637 NM_016332 SEPX1 link to infopage 0.697802 1.320283e-16 6.862961e-12 1.559764e-13
45 8133314 7955810 NM_018457 PRR13 link to infopage 0.697472 1.383441e-16 7.191262e-12 1.598058e-13
46 8133518 8026047 NM_002229 JUNB link to infopage 0.696865 1.506990e-16 7.833483e-12 1.702931e-13
47 8140227 8080487 NM_006254 PRKCD link to infopage 0.696006 1.700583e-16 8.839800e-12 1.880809e-13
48 8133314 7998637 NM_016332 SEPX1 link to infopage 0.696004 1.701141e-16 8.842699e-12 1.842229e-13
49 8140227 8036808 NM_018457 PRR13 link to infopage 0.695855 1.737021e-16 9.029210e-12 1.842696e-13
50 8140227 8026047 NM_002229 JUNB link to infopage 0.694500 2.099739e-16 1.091465e-11 2.182930e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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