[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
11882	8125139	NM_000434	NEU1		sialidase 1 (lysosomal sialidase)
11883	8179851	NM_000434	NEU1		sialidase 1 (lysosomal sialidase)
12866	8178676	NM_000434	NEU1		sialidase 1 (lysosomal sialidase)

Fetching correlation data, please wait...
Getting list of correlations for id 11882.
Getting list of p-values for id 11882.
1 of 3 done.
Getting list of correlations for id 11883.
Getting list of p-values for id 11883.
2 of 3 done.
Getting list of correlations for id 12866.
Getting list of p-values for id 12866.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.202 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179851	8125139	NM_000434	NEU1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125139	8179851	NM_000434	NEU1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178676	8125139	NM_000434	NEU1	0.911957	1.206624e-41	6.272151e-37	2.090717e-37
4	8179851	8178676	NM_000434	NEU1	0.911957	1.206624e-41	6.272151e-37	1.568038e-37
5	8178676	8179851	NM_000434	NEU1	0.911957	1.206624e-41	6.272151e-37	1.254430e-37
6	8125139	8178676	NM_000434	NEU1	0.911957	1.206624e-41	6.272151e-37	1.045359e-37
7	8178676	8087860	NM_007284	TWF2	0.659869	1.920301e-14	9.981919e-10	1.425988e-10
8	8178676	7914112	NM_005248	FGR	0.651187	5.436851e-14	2.826130e-9	3.532662e-10
9	8179851	7914112	NM_005248	FGR	0.648462	7.485284e-14	3.890925e-9	4.323250e-10
10	8125139	7914112	NM_005248	FGR	0.648462	7.485284e-14	3.890925e-9	3.890925e-10
11	8178676	8170882	NM_001183	ATP6AP1	0.637135	2.732855e-13	1.420565e-8	1.291423e-9
12	8179851	8087860	NM_007284	TWF2	0.625391	9.901288e-13	5.146789e-8	4.288991e-9
13	8125139	8087860	NM_007284	TWF2	0.625391	9.901288e-13	5.146789e-8	3.959068e-9
14	8179851	7897745	NM_020350	AGTRAP	0.625376	9.917033e-13	5.154973e-8	3.682123e-9
15	8125139	7897745	NM_020350	AGTRAP	0.625376	9.917033e-13	5.154973e-8	3.436648e-9
16	8178676	8037144	NM_133328	DEDD2	0.622746	1.313353e-12	6.826939e-8	4.266837e-9
17	8178676	7945666	NM_001909	CTSD	0.616826	2.448352e-12	1.272678e-7	7.486339e-9
18	8178676	8035553	NM_007263	COPE	0.616637	2.496834e-12	1.297879e-7	7.210439e-9
19	8179851	8042917	NM_001381	DOK1	0.616546	2.520766e-12	1.310319e-7	6.896416e-9
20	8125139	8042917	NM_001381	DOK1	0.616546	2.520766e-12	1.310319e-7	6.551596e-9
21	8178676	8042917	NM_001381	DOK1	0.613852	3.331225e-12	1.731604e-7	8.245733e-9
22	8178676	7897745	NM_020350	AGTRAP	0.613403	3.488803e-12	1.813515e-7	8.243249e-9
23	8125139	8025255	NM_006949	STXBP2	0.613201	3.561995e-12	1.851561e-7	8.050264e-9
24	8179851	8025255	NM_006949	STXBP2	0.613201	3.561995e-12	1.851561e-7	7.714836e-9
25	8125139	8170882	NM_001183	ATP6AP1	0.610924	4.497196e-12	2.337688e-7	9.350751e-9
26	8179851	8170882	NM_001183	ATP6AP1	0.610924	4.497196e-12	2.337688e-7	8.991106e-9
27	8178676	8018620	NM_001145297	EXOC7	0.609573	5.159381e-12	2.681898e-7	9.932955e-9
28	8179851	8037144	NM_133328	DEDD2	0.609463	5.217188e-12	2.711946e-7	9.685523e-9
29	8125139	8037144	NM_133328	DEDD2	0.609463	5.217188e-12	2.711946e-7	9.351539e-9
30	8178676	7941179	NM_005186	CAPN1	0.609138	5.392301e-12	2.802972e-7	9.343240e-9
31	8125139	8172333	NM_002621	CFP	0.600300	1.302279e-11	6.769376e-7	2.183670e-8
32	8179851	8172333	NM_002621	CFP	0.600300	1.302279e-11	6.769376e-7	2.115430e-8
33	8125139	7941179	NM_005186	CAPN1	0.599997	1.341637e-11	6.973965e-7	2.113323e-8
34	8179851	7941179	NM_005186	CAPN1	0.599997	1.341637e-11	6.973965e-7	2.051166e-8
35	8179851	8035553	NM_007263	COPE	0.599174	1.454424e-11	7.560240e-7	2.160068e-8
36	8125139	8035553	NM_007263	COPE	0.599174	1.454424e-11	7.560240e-7	2.100067e-8
37	8178676	7994939	NM_014771	RNF40	0.596065	1.968345e-11	1.023165e-6	2.765312e-8
38	8178676	8003171	NM_021149	COTL1	0.594384	2.315269e-11	1.203500e-6	3.167106e-8
39	8125139	7994939	NM_014771	RNF40	0.593261	2.578927e-11	1.340552e-6	3.437313e-8
40	8179851	7994939	NM_014771	RNF40	0.593261	2.578927e-11	1.340552e-6	3.351380e-8
41	8178676	8018196	NM_139018	CD300LF	0.593116	2.614970e-11	1.359288e-6	3.315336e-8
42	8179851	8170906	NM_004699	FAM50A	0.592682	2.726018e-11	1.417011e-6	3.373837e-8
43	8125139	8170906	NM_004699	FAM50A	0.592682	2.726018e-11	1.417011e-6	3.295375e-8
44	8178676	8153819	NM_138496	CYHR1	0.588679	3.988143e-11	2.073076e-6	4.711537e-8
45	8125139	7945666	NM_001909	CTSD	0.585719	5.266395e-11	2.737525e-6	6.083388e-8
46	8179851	7945666	NM_001909	CTSD	0.585719	5.266395e-11	2.737525e-6	5.951140e-8
47	8178676	8033300	NM_001080452	GPR108	0.580087	8.870225e-11	4.610832e-6	9.810280e-8
48	8125139	8009653	NM_007261	CD300A	0.579221	9.602535e-11	4.991494e-6	1.039895e-7
49	8179851	8009653	NM_007261	CD300A	0.579221	9.602535e-11	4.991494e-6	1.018672e-7
50	8178676	8110569	NM_003900	SQSTM1	0.578302	1.044227e-10	5.427995e-6	1.085599e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation