[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11882.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11882	8125139	NM_000434	NEU1		sialidase 1 (lysosomal sialidase)

Fetching correlation data, please wait...
Getting list of correlations for id 11882.
Getting list of p-values for id 11882.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.063 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125139	8179851	NM_000434	NEU1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125139	8178676	NM_000434	NEU1	0.911957	1.206624e-41	2.090717e-37	1.045359e-37
3	8125139	7914112	NM_005248	FGR	0.648462	7.485284e-14	1.296975e-9	4.323250e-10
4	8125139	8087860	NM_007284	TWF2	0.625391	9.901288e-13	1.715596e-8	4.288991e-9
5	8125139	7897745	NM_020350	AGTRAP	0.625376	9.917033e-13	1.718324e-8	3.436648e-9
6	8125139	8042917	NM_001381	DOK1	0.616546	2.520766e-12	4.367730e-8	7.279551e-9
7	8125139	8025255	NM_006949	STXBP2	0.613201	3.561995e-12	6.171869e-8	8.816955e-9
8	8125139	8170882	NM_001183	ATP6AP1	0.610924	4.497196e-12	7.792292e-8	9.740365e-9
9	8125139	8037144	NM_133328	DEDD2	0.609463	5.217188e-12	9.039821e-8	1.004425e-8
10	8125139	8172333	NM_002621	CFP	0.600300	1.302279e-11	2.256459e-7	2.256459e-8
11	8125139	7941179	NM_005186	CAPN1	0.599997	1.341637e-11	2.324655e-7	2.113323e-8
12	8125139	8035553	NM_007263	COPE	0.599174	1.454424e-11	2.520080e-7	2.100067e-8
13	8125139	7994939	NM_014771	RNF40	0.593261	2.578927e-11	4.468506e-7	3.437313e-8
14	8125139	8170906	NM_004699	FAM50A	0.592682	2.726018e-11	4.723371e-7	3.373837e-8
15	8125139	7945666	NM_001909	CTSD	0.585719	5.266395e-11	9.125082e-7	6.083388e-8
16	8125139	8009653	NM_007261	CD300A	0.579221	9.602535e-11	1.663831e-6	1.039895e-7
17	8125139	8004271	NM_000018	ACADVL	0.577688	1.104316e-10	1.913448e-6	1.125557e-7
18	8125139	8115997	NM_001031677	RAB24	0.575102	1.395611e-10	2.418176e-6	1.343431e-7
19	8125139	8003903	NM_004313	ARRB2	0.568760	2.457271e-10	4.257714e-6	2.240902e-7
20	8125139	8018196	NM_139018	CD300LF	0.567248	2.807312e-10	4.864229e-6	2.432115e-7
21	8125139	8110569	NM_003900	SQSTM1	0.564662	3.519373e-10	6.098017e-6	2.903818e-7
22	8125139	7912646	NM_001229	CASP9	0.563345	3.945881e-10	6.837029e-6	3.107740e-7
23	8125139	8164252	NM_170600	SH2D3C	0.562245	4.339940e-10	7.519814e-6	3.269484e-7
24	8125139	7984217	NM_025201	PLEKHO2	0.562233	4.344640e-10	7.527958e-6	3.136649e-7
25	8125139	8087473	NM_153273	IP6K1	0.560873	4.884809e-10	8.463908e-6	3.385563e-7
26	8125139	7994353	NM_018690	APOB48R	0.557562	6.482969e-10	1.123304e-5	4.320400e-7
27	8125139	8035456	NM_145256	LRRC25	0.556015	7.391741e-10	1.280767e-5	4.743581e-7
28	8125139	8177717	NM_018950	HLA-F	0.553343	9.257465e-10	1.604041e-5	5.728717e-7
29	8125139	8030374	NM_004107	FCGRT	0.552838	9.657837e-10	1.673413e-5	5.770391e-7
30	8125139	8063078	NM_001127695	CTSA	0.552524	9.914306e-10	1.717852e-5	5.726173e-7
31	8125139	8063955	NM_007346	OGFR	0.552314	1.009001e-9	1.748295e-5	5.639662e-7
32	8125139	8159692	NM_152285	ARRDC1	0.551596	1.071371e-9	1.856365e-5	5.801141e-7
33	8125139	7996318	NM_144601	CMTM3	0.550796	1.145078e-9	1.984077e-5	6.012354e-7
34	8125139	7998510	NM_001287	CLCN7	0.550411	1.182324e-9	2.048612e-5	6.025329e-7
35	8125139	7937150	NM_001109	ADAM8	0.549337	1.292407e-9	2.239354e-5	6.398155e-7
36	8125139	8179019	NM_018950	HLA-F	0.548919	1.337859e-9	2.318108e-5	6.439188e-7
37	8125139	8018620	NM_001145297	EXOC7	0.548914	1.338468e-9	2.319163e-5	6.268009e-7
38	8125139	8001030	NM_013258	PYCARD	0.548081	1.433718e-9	2.484204e-5	6.537378e-7
39	8125139	8076690	NM_001009880	C22orf9	0.547498	1.504191e-9	2.606312e-5	6.682851e-7
40	8125139	7994659	NM_017458	MVP	0.546335	1.654860e-9	2.867376e-5	7.168440e-7
41	8125139	7994756	NM_002720	PPP4C	0.545729	1.739022e-9	3.013203e-5	7.349275e-7
42	8125139	7979984	NM_021260	ZFYVE1	0.544247	1.962512e-9	3.400445e-5	8.096298e-7
43	8125139	7977046	NM_006291	TNFAIP2	0.543931	2.013597e-9	3.488959e-5	8.113858e-7
44	8125139	8012605	NM_201433	GAS7	0.543373	2.106956e-9	3.650723e-5	8.297097e-7
45	8125139	8033300	NM_001080452	GPR108	0.543316	2.116741e-9	3.667677e-5	8.150392e-7
46	8125139	7905664	NM_024330	SLC27A3	0.542761	2.214249e-9	3.836630e-5	8.340500e-7
47	8125139	8126574	NM_015388	YIPF3	0.542477	2.265673e-9	3.925732e-5	8.352621e-7
48	8125139	8134552	NM_005720	ARPC1B	0.542276	2.302820e-9	3.990097e-5	8.312701e-7
49	8125139	7921487	NM_003564	TAGLN2	0.540166	2.729621e-9	4.729614e-5	9.652273e-7
50	8125139	7910164	NM_020247	CABC1	0.539609	2.854347e-9	4.945726e-5	9.891453e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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