[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2022	7908931	NM_014359	OPTC		opticin

Fetching correlation data, please wait...
Getting list of correlations for id 2022.
Getting list of p-values for id 2022.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7908931	8132070	NM_002047	GARS	-0.791791	8.719269e-24	1.510788e-19	1.510788e-19
2	7908931	8163275	NM_001080398	KIAA0368	-0.789578	1.414136e-23	2.450274e-19	1.225137e-19
3	7908931	8147483	NM_178812	MTDH	-0.780870	8.974671e-23	1.555041e-18	5.183471e-19
4	7908931	8047641	NM_177538	CYP20A1	-0.772163	5.243509e-22	9.085429e-18	2.271357e-18
5	7908931	8101376	NM_014933	SEC31A	-0.770279	7.603526e-22	1.317463e-17	2.634926e-18
6	7908931	8103106	NM_006726	LRBA	-0.769474	8.901857e-22	1.542425e-17	2.570708e-18
7	7908931	7915882	NM_014774	KIAA0494	-0.769423	8.991217e-22	1.557908e-17	2.225583e-18
8	7908931	7916443	NM_015306	USP24	-0.769155	9.476043e-22	1.641914e-17	2.052393e-18
9	7908931	7967149	NM_016237	ANAPC5	-0.767598	1.282574e-21	2.222316e-17	2.469240e-18
10	7908931	7931187	NM_004725	BUB3	-0.767589	1.284783e-21	2.226143e-17	2.226143e-18
11	7908931	8145136	NM_005605	PPP3CC	-0.767526	1.300630e-21	2.253602e-17	2.048729e-18
12	7908931	7996947	NM_030579	CYB5B	-0.766375	1.624492e-21	2.814756e-17	2.345630e-18
13	7908931	8051670	NM_005633	SOS1	-0.764549	2.305033e-21	3.993931e-17	3.072254e-18
14	7908931	7917156	NM_003902	FUBP1	-0.763346	2.898051e-21	5.021452e-17	3.586752e-18
15	7908931	7962083			0.762830	3.195619e-21	5.537050e-17	3.691366e-18
16	7908931	7971620	NM_002267	KPNA3	-0.762153	3.631104e-21	6.291614e-17	3.932258e-18
17	7908931	7907024	NM_017542	POGK	-0.761172	4.367533e-21	7.567624e-17	4.451544e-18
18	7908931	8051204	NM_014860	SUPT7L	-0.761101	4.425975e-21	7.668886e-17	4.260492e-18
19	7908931	8054614	NM_022662	ANAPC1	-0.757528	8.602018e-21	1.490472e-16	7.844588e-18
20	7908931	7913300	NM_016287	HP1BP3	-0.757105	9.299552e-21	1.611333e-16	8.056667e-18
21	7908931	8017776	NM_014877	HELZ	-0.755888	1.162500e-20	2.014264e-16	9.591734e-18
22	7908931	7988581	NM_014701	SECISBP2L	-0.755066	1.350777e-20	2.340491e-16	1.063860e-17
23	7908931	7979849	NM_003861	DCAF5	-0.754879	1.397425e-20	2.421319e-16	1.052747e-17
24	7908931	7971134	NM_025138	C13orf23	-0.754607	1.468245e-20	2.544029e-16	1.060012e-17
25	7908931	8107375	NM_022828	YTHDC2	-0.754580	1.475726e-20	2.556990e-16	1.022796e-17
26	7908931	7982957	NM_001080541	MGA	-0.754235	1.571063e-20	2.722181e-16	1.046993e-17
27	7908931	8123524	NM_018303	EXOC2	-0.753800	1.699841e-20	2.945314e-16	1.090857e-17
28	7908931	7957008	NM_007007	CPSF6	-0.753351	1.843884e-20	3.194899e-16	1.141035e-17
29	7908931	7999562	NM_002582	PARN	-0.752972	1.974337e-20	3.420934e-16	1.179632e-17
30	7908931	8163733	NM_018249	CDK5RAP2	-0.752215	2.262797e-20	3.920748e-16	1.306916e-17
31	7908931	8095048	NM_030917	FIP1L1	-0.751811	2.432743e-20	4.215213e-16	1.359746e-17
32	7908931	7968931	NM_031431	COG3	-0.750784	2.923997e-20	5.066410e-16	1.583253e-17
33	7908931	8136401	NM_015135	NUP205	-0.749773	3.500659e-20	6.065592e-16	1.838058e-17
34	7908931	8087951	NM_018165	PBRM1	-0.749717	3.535701e-20	6.126309e-16	1.801856e-17
35	7908931	8085000	NM_032773	LRCH3	-0.748478	4.403127e-20	7.629298e-16	2.179799e-17
36	7908931	7936614	NM_003750	EIF3A	-0.747642	5.102053e-20	8.840327e-16	2.455646e-17
37	7908931	7920766	NM_018489	ASH1L	-0.747304	5.414747e-20	9.382131e-16	2.535711e-17
38	7908931	7974229	NM_014315	KLHDC2	-0.746765	5.950843e-20	1.031103e-15	2.713428e-17
39	7908931	7926565	NM_004641	MLLT10	-0.746756	5.961124e-20	1.032884e-15	2.648420e-17
40	7908931	8135576	NM_015641	TES	-0.745215	7.800173e-20	1.351536e-15	3.378840e-17
41	7908931	8096556	NM_015143	METAP1	-0.744348	9.067146e-20	1.571064e-15	3.831864e-17
42	7908931	8134180	NM_019004	ANKIB1	-0.744319	9.112507e-20	1.578924e-15	3.759343e-17
43	7908931	8128956	NM_002037	FYN	-0.744083	9.493118e-20	1.644873e-15	3.825285e-17
44	7908931	7967287	NM_017612	ZCCHC8	-0.743718	1.011140e-19	1.752002e-15	3.981822e-17
45	7908931	8049509	NM_015893	PRLH	0.742520	1.242794e-19	2.153389e-15	4.785308e-17
46	7908931	8163972	NM_001100588	RC3H2	-0.742193	1.314648e-19	2.277891e-15	4.951938e-17
47	7908931	8148517	NM_001702	BAI1	0.741778	1.411357e-19	2.445458e-15	5.203101e-17
48	7908931	8083282	NM_032383	HPS3	-0.741603	1.454225e-19	2.519736e-15	5.249450e-17
49	7908931	8168316	NM_181672	OGT	-0.741514	1.476694e-19	2.558668e-15	5.221772e-17
50	7908931	8100251	NM_015030	FRYL	-0.741335	1.522515e-19	2.638063e-15	5.276125e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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