[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3888	8132406	NM_005402	RALA		v-ral simian leukemia viral oncogene homolog A (ras related)

Fetching correlation data, please wait...
Getting list of correlations for id 3888.
Getting list of p-values for id 3888.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8132406	8107259	NM_138773	SLC25A46	0.662858	1.331408e-14	2.306931e-10	2.306931e-10
2	8132406	7954777	NM_032834	ALG10	0.655332	3.322136e-14	5.756265e-10	2.878133e-10
3	8132406	7960131	ENST00000425052		0.649664	6.503140e-14	1.126799e-9	3.755997e-10
4	8132406	8109821	NM_006013	RPL10	0.642780	1.442921e-13	2.500149e-9	6.250372e-10
5	8132406	7903010	NM_000969	RPL5	0.641359	1.696783e-13	2.940015e-9	5.880031e-10
6	8132406	7954789	NM_001013620	ALG10B	0.639812	2.022026e-13	3.503565e-9	5.839275e-10
7	8132406	8041149	NM_015131	WDR43	0.635928	3.127401e-13	5.418847e-9	7.741210e-10
8	8132406	8142019	NM_002553	ORC5L	0.634591	3.628749e-13	6.287533e-9	7.859416e-10
9	8132406	8107458	NM_016144	COMMD10	0.634341	3.730666e-13	6.464125e-9	7.182361e-10
10	8132406	7946635	NM_021211	ZBED5	0.632783	4.431729e-13	7.678857e-9	7.678857e-10
11	8132406	7908777	ENST00000412093		0.631981	4.840371e-13	8.386911e-9	7.624464e-10
12	8132406	7902634	NM_025065	RPF1	0.631709	4.987435e-13	8.641729e-9	7.201441e-10
13	8132406	8131539	NM_018374	TMEM106B	0.626240	9.038222e-13	1.566053e-8	1.204656e-9
14	8132406	8163000	ENST00000363035		0.622283	1.379669e-12	2.390553e-8	1.707538e-9
15	8132406	8171747	NM_001412	EIF1AX	0.621837	1.446388e-12	2.506157e-8	1.670771e-9
16	8132406	8096808	NM_017918	CCDC109B	0.621147	1.555937e-12	2.695972e-8	1.684982e-9
17	8132406	7985044	NM_173469	UBE2Q2	0.620834	1.608303e-12	2.786706e-8	1.639239e-9
18	8132406	7955425	NM_005171	ATF1	0.619146	1.921027e-12	3.328563e-8	1.849202e-9
19	8132406	7910099	NM_001130440	SRP9	0.618782	1.995917e-12	3.458325e-8	1.820171e-9
20	8132406	7918847	NM_001102396	SIKE1	0.617819	2.207461e-12	3.824868e-8	1.912434e-9
21	8132406	8111925	NM_001014279	C5orf39	0.617733	2.227485e-12	3.859563e-8	1.837887e-9
22	8132406	8035773	NM_001099269	ZNF506	0.615924	2.688911e-12	4.659076e-8	2.117762e-9
23	8132406	7951325	NM_032299	DCUN1D5	0.615304	2.867374e-12	4.968300e-8	2.160130e-9
24	8132406	7972557	NM_004951	GPR183	0.614423	3.140765e-12	5.442003e-8	2.267501e-9
25	8132406	7989885	NM_001031723	DNAJB14	0.613971	3.290801e-12	5.701972e-8	2.280789e-9
26	8132406	7917088	NM_005482	PIGK	0.613935	3.302752e-12	5.722679e-8	2.201030e-9
27	8132406	8112182	NM_152622	MIER3	0.612407	3.864526e-12	6.696064e-8	2.480024e-9
28	8132406	7974387	NM_145251	STYX	0.612005	4.026751e-12	6.977151e-8	2.491840e-9
29	8132406	8111533	NM_001007527	LMBRD2	0.611997	4.030172e-12	6.983079e-8	2.407958e-9
30	8132406	8169683	NM_006777	ZBTB33	0.611830	4.099725e-12	7.103593e-8	2.367864e-9
31	8132406	8023735	NM_019022	TMX3	0.610433	4.727825e-12	8.191903e-8	2.642549e-9
32	8132406	7915995	NM_007051	FAF1	0.610347	4.769012e-12	8.263267e-8	2.582271e-9
33	8132406	7996012	NM_012106	ARL2BP	0.610158	4.862039e-12	8.424455e-8	2.552865e-9
34	8132406	8122409	NM_003630	PEX3	0.610045	4.917902e-12	8.521248e-8	2.506249e-9
35	8132406	8135688	NM_016200	NAA38	0.608108	5.983986e-12	1.036845e-7	2.962415e-9
36	8132406	8027650	NM_005499	UBA2	0.606691	6.901715e-12	1.195860e-7	3.321834e-9
37	8132406	8151935	NM_000989	RPL30	0.605672	7.644677e-12	1.324593e-7	3.579981e-9
38	8132406	7901038	NM_001012	RPS8	0.605443	7.821585e-12	1.355246e-7	3.566437e-9
39	8132406	8009366	NM_015462	NOL11	0.604811	8.331527e-12	1.443604e-7	3.701548e-9
40	8132406	7957737	NM_001032283	TMPO	0.604426	8.657399e-12	1.500067e-7	3.750169e-9
41	8132406	7913712	NM_006625	SRSF10	0.604130	8.916658e-12	1.544989e-7	3.768267e-9
42	8132406	7956743	NM_001034996	RPL14	0.603655	9.348104e-12	1.619746e-7	3.856538e-9
43	8132406	7935002	NM_003133	SRP9	0.603053	9.924512e-12	1.719620e-7	3.999117e-9
44	8132406	8152465	NM_003756	EIF3H	0.602549	1.043285e-11	1.807700e-7	4.108409e-9
45	8132406	7923007	NM_015984	UCHL5	0.602203	1.079578e-11	1.870585e-7	4.156856e-9
46	8132406	8052562	NM_006430	CCT4	0.602164	1.083762e-11	1.877834e-7	4.082248e-9
47	8132406	8162696	NR_027302	XPA	0.601838	1.119201e-11	1.939240e-7	4.126043e-9
48	8132406	8122348	NM_016485	VTA1	0.601659	1.139228e-11	1.973940e-7	4.112374e-9
49	8132406	7922309	NM_003762	VAMP4	0.601549	1.151641e-11	1.995448e-7	4.072342e-9
50	8132406	8097543	NM_014487	ZNF330	0.601511	1.155957e-11	2.002926e-7	4.005852e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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