[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2070	7959052	NM_181578	RFC5		replication factor C (activator 1) 5, 36.5kDa

Fetching correlation data, please wait...
Getting list of correlations for id 2070.
Getting list of p-values for id 2070.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.104 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7959052	8063755	BC054002	C20orf177	0.437039	3.141612e-6	5.443470e-2	5.443470e-2
2	7959052	8052622	NR_003131	LOC388955	0.419248	8.529009e-6	1.477821e-1	7.389107e-2
3	7959052	8161174	NM_005476	GNE	0.400340	2.320987e-5	4.021574e-1	1.340525e-1
4	7959052	8174677	AK298877	CXorf56	0.399607	2.409890e-5	4.175616e-1	1.043904e-1
5	7959052	8065880	NM_178468	FAM83C	-0.397556	2.676028e-5	4.636753e-1	9.273506e-2
6	7959052	7914940	NM_031280	MRPS15	0.393618	3.265889e-5	5.658807e-1	9.431344e-2
7	7959052	7978272	NM_014430	CIDEB	0.393262	3.324875e-5	5.761012e-1	8.230016e-2
8	7959052	8135229	NM_031905	ARMC10	0.389616	3.988381e-5	6.910667e-1	8.638334e-2
9	7959052	7948424	NM_017840	MRPL16	0.386968	4.545876e-5	7.876640e-1	8.751822e-2
10	7959052	8133741	NM_030570	UPK3B	-0.386605	4.627675e-5	8.018372e-1	8.018372e-2
11	7959052	7940473	NM_016464	TMEM138	0.386434	4.666775e-5	8.086122e-1	7.351020e-2
12	7959052	8131583	NM_001159767	BZW2	0.385525	4.879636e-5	8.454945e-1	7.045788e-2
13	7959052	7911341	NC_001807		0.384072	5.238460e-5	9.076679e-1	6.982061e-2
14	7959052	7935951	NM_024541	C10orf76	0.379698	6.473518e-5	1.121666e+0	8.011903e-2
15	7959052	7962358	NM_005748	YAF2	0.377379	7.233653e-5	1.253375e+0	8.355834e-2
16	7959052	8095221	NM_001079525	PAICS	0.376954	7.381607e-5	1.279011e+0	7.993819e-2
17	7959052	8040831	NM_016085	C2orf28	0.376206	7.649152e-5	1.325369e+0	7.796285e-2
18	7959052	8165700	NC_001807		0.373722	8.602977e-5	1.490638e+0	8.281322e-2
19	7959052	8166049	NM_001039091	PRPS2	0.373166	8.831379e-5	1.530213e+0	8.053753e-2
20	7959052	8042801	NM_080916	DGUOK	0.371925	9.361009e-5	1.621982e+0	8.109910e-2
21	7959052	8104609	ENST00000327611		-0.371631	9.490668e-5	1.644448e+0	7.830705e-2
22	7959052	7919950	NM_002651	PI4KB	0.369504	1.048079e-4	1.816006e+0	8.254574e-2
23	7959052	8037389	NM_019108	C19orf61	0.368685	1.088682e-4	1.886359e+0	8.201560e-2
24	7959052	7912750	NM_018994	FBXO42	0.366825	1.186440e-4	2.055745e+0	8.565605e-2
25	7959052	8007290	NM_170607	MLX	0.366739	1.191141e-4	2.063890e+0	8.255561e-2
26	7959052	7970696	NM_182488	USP12	0.366660	1.195481e-4	2.071410e+0	7.966961e-2
27	7959052	8101411	NM_194282	LIN54	0.365041	1.287797e-4	2.231367e+0	8.264321e-2
28	7959052	8146448	NM_014175	MRPL15	0.363808	1.362456e-4	2.360727e+0	8.431169e-2
29	7959052	7912385	NM_001001998	EXOSC10	0.362797	1.426640e-4	2.471938e+0	8.523925e-2
30	7959052	8033795	NM_152289	ZNF561	0.359797	1.634121e-4	2.831441e+0	9.438137e-2
31	7959052	7979732	NM_006370	VTI1B	0.358448	1.736203e-4	3.008318e+0	9.704252e-2
32	7959052	7898725	NM_005747	CELA3A	-0.358110	1.762753e-4	3.054323e+0	9.544759e-2
33	7959052	7919226	NM_006468	POLR3C	0.358049	1.767579e-4	3.062683e+0	9.280859e-2
34	7959052	8143772	NM_002889	RARRES2	-0.357554	1.807106e-4	3.131172e+0	9.209330e-2
35	7959052	7955425	NM_005171	ATF1	0.355107	2.015145e-4	3.491641e+0	9.976117e-2
36	7959052	7977820	NM_001039619	PRMT5	0.353658	2.148464e-4	3.722644e+0	1.034068e-1
37	7959052	8175924	NM_003491	NAA10	0.352733	2.237882e-4	3.877578e+0	1.047994e-1
38	7959052	8119109	NM_152734	C6orf89	0.351912	2.320033e-4	4.019920e+0	1.057874e-1
39	7959052	8119842	NM_203290	POLR1C	0.351892	2.322146e-4	4.023583e+0	1.031688e-1
40	7959052	8175102	NM_182314	ENOX2	0.350973	2.417451e-4	4.188717e+0	1.047179e-1
41	7959052	8166096	NM_152634	TCEANC	0.350697	2.446825e-4	4.239613e+0	1.034052e-1
42	7959052	8176263	NM_015975	TAF9B	0.348620	2.678471e-4	4.640987e+0	1.104997e-1
43	7959052	8173732	NM_015975	TAF9B	0.348620	2.678471e-4	4.640987e+0	1.079299e-1
44	7959052	7907466	NM_018122	DARS2	0.348007	2.750571e-4	4.765914e+0	1.083162e-1
45	7959052	7961983	NM_016551	TM7SF3	0.346838	2.893200e-4	5.013047e+0	1.114010e-1
46	7959052	7989968	NM_033429	CALML4	0.346447	2.942314e-4	5.098147e+0	1.108293e-1
47	7959052	8094948	NM_020846	SLAIN2	0.346263	2.965731e-4	5.138722e+0	1.093345e-1
48	7959052	7986394	NM_144598	LRRC28	0.345307	3.090220e-4	5.354425e+0	1.115505e-1
49	7959052	8059996	NM_022817	PER2	0.343987	3.270008e-4	5.665942e+0	1.156315e-1
50	7959052	7906746	NM_003001	SDHC	0.343844	3.290045e-4	5.700662e+0	1.140132e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation