[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12321	8118535	NM_006913	RNF5		ring finger protein 5
12324	8179472	NM_006913	RNF5		ring finger protein 5

Fetching correlation data, please wait...
Getting list of correlations for id 12321.
Getting list of p-values for id 12321.
1 of 2 done.
Getting list of correlations for id 12324.
Getting list of p-values for id 12324.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.167 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118535	8179472	NM_006913	RNF5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179472	8118535	NM_006913	RNF5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118535	8150356	NR_003129	RNF5P1	0.963319	1.170385e-60	4.055854e-56	1.351951e-56
4	8179472	8150356	NR_003129	RNF5P1	0.963319	1.170385e-60	4.055854e-56	1.013963e-56
5	8118535	8178188	NR_003129	RNF5P1	0.842067	2.249202e-29	7.794385e-25	1.558877e-25
6	8179472	8178188	NR_003129	RNF5P1	0.842067	2.249202e-29	7.794385e-25	1.299064e-25
7	8179472	7928600	NM_001099692	EIF5AL1	0.723798	2.712726e-18	9.400680e-14	1.342954e-14
8	8118535	7928600	NM_001099692	EIF5AL1	0.723798	2.712726e-18	9.400680e-14	1.175085e-14
9	8118535	7928630			0.723092	3.032149e-18	1.050761e-13	1.167512e-14
10	8179472	7928630			0.723092	3.032149e-18	1.050761e-13	1.050761e-14
11	8118535	7934753	NM_001099692	EIF5AL1	0.716042	9.045623e-18	3.134670e-13	2.849700e-14
12	8179472	7934753	NM_001099692	EIF5AL1	0.716042	9.045623e-18	3.134670e-13	2.612225e-14
13	8179472	7948534	NM_001923	DDB1	0.661419	1.589031e-14	5.506627e-10	4.235867e-11
14	8118535	7948534	NM_001923	DDB1	0.661419	1.589031e-14	5.506627e-10	3.933305e-11
15	8179472	7973067	NM_000270	PNP	0.659980	1.894537e-14	6.565328e-10	4.376886e-11
16	8118535	7973067	NM_000270	PNP	0.659980	1.894537e-14	6.565328e-10	4.103330e-11
17	8118535	7934326	NM_016065	MRPS16	0.658976	2.140643e-14	7.418183e-10	4.363637e-11
18	8179472	7934326	NM_016065	MRPS16	0.658976	2.140643e-14	7.418183e-10	4.121213e-11
19	8179472	8084345	NM_004068	AP2M1	0.655580	3.224753e-14	1.117506e-9	5.881610e-11
20	8118535	8084345	NM_004068	AP2M1	0.655580	3.224753e-14	1.117506e-9	5.587530e-11
21	8118535	8160968	NM_013442	STOML2	0.637996	2.481104e-13	8.598019e-9	4.094295e-10
22	8179472	8160968	NM_013442	STOML2	0.637996	2.481104e-13	8.598019e-9	3.908190e-10
23	8118535	8159642	NM_006088	TUBB2C	0.630782	5.520613e-13	1.913113e-8	8.317883e-10
24	8179472	8159642	NM_006088	TUBB2C	0.630782	5.520613e-13	1.913113e-8	7.971305e-10
25	8179472	7964234	NM_001686	ATP5B	0.628397	7.158754e-13	2.480795e-8	9.923179e-10
26	8118535	7964234	NM_001686	ATP5B	0.628397	7.158754e-13	2.480795e-8	9.541518e-10
27	8179472	8026122	NM_005053	RAD23A	0.622321	1.374068e-12	4.761696e-8	1.763591e-9
28	8118535	8026122	NM_005053	RAD23A	0.622321	1.374068e-12	4.761696e-8	1.700606e-9
29	8179472	7958414	NM_014301	ISCU	0.620072	1.742803e-12	6.039509e-8	2.082589e-9
30	8118535	7958414	NM_014301	ISCU	0.620072	1.742803e-12	6.039509e-8	2.013170e-9
31	8118535	8005166	NM_018955	UBB	0.612648	3.770224e-12	1.306533e-7	4.214624e-9
32	8179472	8005166	NM_018955	UBB	0.612648	3.770224e-12	1.306533e-7	4.082917e-9
33	8179472	7910229	NM_001024226	ARF1	0.610436	4.726320e-12	1.637859e-7	4.963209e-9
34	8118535	7910229	NM_001024226	ARF1	0.610436	4.726320e-12	1.637859e-7	4.817233e-9
35	8179472	8062174	NM_198398	ERGIC3	0.604900	8.257937e-12	2.861706e-7	8.176302e-9
36	8118535	8062174	NM_198398	ERGIC3	0.604900	8.257937e-12	2.861706e-7	7.949182e-9
37	8179472	7955896	NM_016057	COPZ1	0.601533	1.153394e-11	3.996973e-7	1.080263e-8
38	8118535	7955896	NM_016057	COPZ1	0.601533	1.153394e-11	3.996973e-7	1.051835e-8
39	8118535	7928019	NM_033500	HK1	0.599632	1.390612e-11	4.819028e-7	1.235648e-8
40	8179472	7928019	NM_033500	HK1	0.599632	1.390612e-11	4.819028e-7	1.204757e-8
41	8179472	7921806	NM_003779	B4GALT3	0.599117	1.462480e-11	5.068078e-7	1.236116e-8
42	8118535	7921806	NM_003779	B4GALT3	0.599117	1.462480e-11	5.068078e-7	1.206685e-8
43	8179472	7901601	NM_016491	MRPL37	0.594531	2.282604e-11	7.910135e-7	1.839566e-8
44	8118535	7901601	NM_016491	MRPL37	0.594531	2.282604e-11	7.910135e-7	1.797758e-8
45	8179472	7916403	NM_145716	SSBP3	0.592755	2.707147e-11	9.381349e-7	2.084744e-8
46	8118535	7916403	NM_145716	SSBP3	0.592755	2.707147e-11	9.381349e-7	2.039424e-8
47	8179472	8144669	NM_004462	FDFT1	0.592471	2.781753e-11	9.639888e-7	2.051040e-8
48	8118535	8144669	NM_004462	FDFT1	0.592471	2.781753e-11	9.639888e-7	2.008310e-8
49	8179472	8060225	NM_203346	HDLBP	0.589103	3.831708e-11	1.327840e-6	2.709878e-8
50	8118535	8060225	NM_203346	HDLBP	0.589103	3.831708e-11	1.327840e-6	2.655680e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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