[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1980	7959002	NM_138432	SDSL		serine dehydratase-like

Fetching correlation data, please wait...
Getting list of correlations for id 1980.
Getting list of p-values for id 1980.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7959002	7945688	NR_003512	INS-IGF2	0.693246	2.500194e-16	4.332087e-12	4.332087e-12
2	7959002	8153101	NM_152888	COL22A1	0.690649	3.579301e-16	6.201855e-12	3.100928e-12
3	7959002	8046590	NM_194247	HNRNPA3	-0.684727	7.998909e-16	1.385971e-11	4.619903e-12
4	7959002	8027556	NM_002333	LRP3	0.681548	1.222204e-15	2.117713e-11	5.294283e-12
5	7959002	7937667	NM_003957	BRSK2	0.678342	1.864037e-15	3.229816e-11	6.459632e-12
6	7959002	8038785	BC032383	VSIG10L	0.678297	1.875067e-15	3.248928e-11	5.414881e-12
7	7959002	7968931	NM_031431	COG3	-0.676117	2.490702e-15	4.315640e-11	6.165200e-12
8	7959002	8031157	NM_020659	TTYH1	0.675957	2.542865e-15	4.406022e-11	5.507527e-12
9	7959002	8010030	NM_003857	GALR2	0.675688	2.633175e-15	4.562502e-11	5.069447e-12
10	7959002	8148517	NM_001702	BAI1	0.675050	2.859767e-15	4.955118e-11	4.955118e-12
11	7959002	8084694	NM_001967	EIF4A2	-0.674031	3.260844e-15	5.650064e-11	5.136422e-12
12	7959002	7971550	NM_014166	MED4	-0.673748	3.381886e-15	5.859793e-11	4.883161e-12
13	7959002	7954388	NM_016072	GOLT1B	-0.673144	3.654247e-15	6.331714e-11	4.870549e-12
14	7959002	8071444	NM_144704	AIFM3	0.672806	3.816004e-15	6.611990e-11	4.722850e-12
15	7959002	7903281	NM_012243	SLC35A3	-0.672015	4.222112e-15	7.315653e-11	4.877102e-12
16	7959002	8005529	NM_152351	SLC5A10	0.671587	4.459202e-15	7.726459e-11	4.829037e-12
17	7959002	7947928	NM_031909	C1QTNF4	0.670802	4.927567e-15	8.537995e-11	5.022350e-12
18	7959002	7920506	NM_001010846	SHE	0.670122	5.371491e-15	9.307182e-11	5.170657e-12
19	7959002	8101013	NM_015436	RCHY1	-0.668663	6.458706e-15	1.119100e-10	5.890000e-12
20	7959002	8100834	NM_002092	GRSF1	-0.667506	7.470093e-15	1.294343e-10	6.471715e-12
21	7959002	8134827	NM_173564	C7orf51	0.667409	7.561469e-15	1.310176e-10	6.238932e-12
22	7959002	7930380	NM_016824	ADD3	-0.665560	9.526641e-15	1.650681e-10	7.503096e-12
23	7959002	7947396	NM_001326	CSTF3	-0.664622	1.070534e-14	1.854914e-10	8.064845e-12
24	7959002	7939137	NM_006360	EIF3M	-0.664007	1.155348e-14	2.001872e-10	8.341133e-12
25	7959002	8094960	NM_152679	SLC10A4	0.663373	1.249439e-14	2.164903e-10	8.659611e-12
26	7959002	8080991	NM_194247	HNRNPA3	-0.663173	1.280777e-14	2.219201e-10	8.535390e-12
27	7959002	7939465	NM_016142	HSD17B12	-0.662430	1.403429e-14	2.431722e-10	9.006377e-12
28	7959002	7942553	NM_014752	SPCS2	-0.662238	1.436955e-14	2.489811e-10	8.892184e-12
29	7959002	8076007	NM_025045	BAIAP2L2	0.661727	1.530086e-14	2.651179e-10	9.141997e-12
30	7959002	7938090	NM_176875	CCKBR	0.661062	1.659963e-14	2.876218e-10	9.587395e-12
31	7959002	7994985	NM_014712	SETD1A	0.660609	1.754636e-14	3.040257e-10	9.807282e-12
32	7959002	7978739	NM_001079537	TRAPPC6B	-0.659691	1.962352e-14	3.400167e-10	1.062552e-11
33	7959002	8119080	NM_003017	SRSF3	-0.659381	2.037840e-14	3.530965e-10	1.069989e-11
34	7959002	8064059	NM_020882	COL20A1	0.658602	2.240048e-14	3.881331e-10	1.141568e-11
35	7959002	7901913	NM_012183	FOXD3	0.658298	2.324100e-14	4.026968e-10	1.150562e-11
36	7959002	8062873	NM_022358	KCNK15	0.658208	2.349469e-14	4.070925e-10	1.130812e-11
37	7959002	7916304	NM_147193	GLIS1	0.657586	2.533167e-14	4.389219e-10	1.186275e-11
38	7959002	7976189	NM_002802	PSMC1	-0.657498	2.560162e-14	4.435993e-10	1.167367e-11
39	7959002	8144894	NM_018142	INTS10	-0.657493	2.561825e-14	4.438874e-10	1.138173e-11
40	7959002	7914180	NM_014752	SPCS2	-0.657306	2.620127e-14	4.539895e-10	1.134974e-11
41	7959002	7937560	NM_002457	MUC2	0.657277	2.629305e-14	4.555797e-10	1.111170e-11
42	7959002	8100714	NM_001031732	YTHDC1	-0.657116	2.681111e-14	4.645560e-10	1.106086e-11
43	7959002	7897006	NM_006983	MMP23B	0.656969	2.728800e-14	4.728193e-10	1.099580e-11
44	7959002	8131195	NM_133463	AMZ1	0.656934	2.740535e-14	4.748524e-10	1.079210e-11
45	7959002	8153704	NM_031309	SCRT1	0.656633	2.841529e-14	4.923518e-10	1.094115e-11
46	7959002	8045455	NM_014607	UBXN4	-0.656547	2.871333e-14	4.975158e-10	1.081556e-11
47	7959002	8067521	NM_080473	GATA5	0.656544	2.872294e-14	4.976825e-10	1.058899e-11
48	7959002	7975113	NM_145165	CHURC1	-0.655919	3.096167e-14	5.364728e-10	1.117652e-11
49	7959002	7978093	NM_032452	JPH4	0.655524	3.246509e-14	5.625226e-10	1.148005e-11
50	7959002	8016898	NM_001078166	SRSF1	-0.655289	3.339167e-14	5.785774e-10	1.157155e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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