[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1235	8004534	NM_001040	SHBG		sex hormone-binding globulin

Fetching correlation data, please wait...
Getting list of correlations for id 1235.
Getting list of p-values for id 1235.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8004534	8010012	NM_001113324	C17orf106	0.676562	2.350944e-15	4.073481e-11	4.073481e-11
2	8004534	8170753	NM_014370	SRPK3	0.672373	4.033440e-15	6.988742e-11	3.494371e-11
3	8004534	8118302	BC137541	C6orf26	0.666568	8.401402e-15	1.455711e-10	4.852370e-11
4	8004534	8155661	NM_199135	FOXD4L3	0.662473	1.396128e-14	2.419070e-10	6.047676e-11
5	8004534	8104781	NM_016568	RXFP3	0.661494	1.574388e-14	2.727942e-10	5.455884e-11
6	8004534	8134981	NM_003302	TRIP6	0.659144	2.097570e-14	3.634460e-10	6.057433e-11
7	8004534	7956551	NM_182947	ARHGEF25	0.658289	2.326772e-14	4.031598e-10	5.759426e-11
8	8004534	7992049	NM_207112	HAGHL	0.657929	2.430298e-14	4.210977e-10	5.263721e-11
9	8004534	7949344	NM_005468	NAALADL1	0.654489	3.674206e-14	6.366296e-10	7.073662e-11
10	8004534	8044634	NM_012184	FOXD4L1	0.652087	4.888385e-14	8.470104e-10	8.470104e-11
11	8004534	8161533	NM_001085476	FOXD4L6	0.651347	5.335187e-14	9.244279e-10	8.403890e-11
12	8004534	8038362	NM_178449	PTH2	0.650566	5.849143e-14	1.013481e-9	8.445675e-11
13	8004534	8027213	NM_198537	YJEFN3	0.650453	5.927594e-14	1.027074e-9	7.900570e-11
14	8004534	8083447	NM_002563	P2RY1	0.650218	6.093727e-14	1.055860e-9	7.541858e-11
15	8004534	8075934	NM_014550	CARD10	0.650007	6.246799e-14	1.082383e-9	7.215885e-11
16	8004534	8109179	NM_133263	PPARGC1B	0.646446	9.462413e-14	1.639552e-9	1.024720e-10
17	8004534	8064111	NM_032957	RTEL1	0.643656	1.305219e-13	2.261553e-9	1.330325e-10
18	8004534	7955624	NM_002284	KRT86	0.642721	1.452637e-13	2.516983e-9	1.398324e-10
19	8004534	7994052	NM_006043	HS3ST2	0.642220	1.538164e-13	2.665177e-9	1.402725e-10
20	8004534	7939665	NM_001012334	MDK	0.642210	1.539886e-13	2.668161e-9	1.334081e-10
21	8004534	7934544	NM_144589	COMTD1	0.641829	1.608281e-13	2.786669e-9	1.326985e-10
22	8004534	7992302	NM_020825	CRAMP1L	0.641810	1.611738e-13	2.792658e-9	1.269390e-10
23	8004534	8149612	NM_021020	LZTS1	0.641519	1.666176e-13	2.886984e-9	1.255210e-10
24	8004534	7947540	NM_145803	TRAF6	-0.641270	1.713898e-13	2.969671e-9	1.237363e-10
25	8004534	8145865	NM_032777	GPR124	0.641032	1.761027e-13	3.051332e-9	1.220533e-10
26	8004534	8178080	BC137541	C6orf26	0.640298	1.913727e-13	3.315915e-9	1.275352e-10
27	8004534	8032770	NM_016539	SIRT6	0.638121	2.446731e-13	4.239451e-9	1.570167e-10
28	8004534	8059019	NM_057093	CRYBA2	0.636658	2.882603e-13	4.994686e-9	1.783817e-10
29	8004534	8032312	NM_138813	ATP8B3	0.636222	3.026523e-13	5.244056e-9	1.808295e-10
30	8004534	8170562	NM_175742	MAGEA2	0.636125	3.059238e-13	5.300742e-9	1.766914e-10
31	8004534	7996448	NM_003946	NOL3	0.634643	3.607789e-13	6.251215e-9	2.016521e-10
32	8004534	8090639	NM_014602	PIK3R4	-0.633164	4.249137e-13	7.362480e-9	2.300775e-10
33	8004534	7963502	NM_175078	KRT77	0.632896	4.376521e-13	7.583199e-9	2.297939e-10
34	8004534	7945688	NR_003512	INS-IGF2	0.632164	4.744075e-13	8.220058e-9	2.417664e-10
35	8004534	8066590	NM_003279	TNNC2	0.631461	5.124764e-13	8.879679e-9	2.537051e-10
36	8004534	8027760	NM_005031	FXYD1	0.630933	5.430486e-13	9.409403e-9	2.613723e-10
37	8004534	7920928	NM_024897	PAQR6	0.630236	5.860155e-13	1.015389e-8	2.744295e-10
38	8004534	8064014	NM_022082	SLC17A9	0.629330	6.468861e-13	1.120860e-8	2.949630e-10
39	8004534	8137783	NM_001097620	TMEM184A	0.629305	6.486469e-13	1.123911e-8	2.881822e-10
40	8004534	8157383	NM_032888	COL27A1	0.629046	6.671342e-13	1.155943e-8	2.889858e-10
41	8004534	8000467	NM_001109763	GSG1L	0.628765	6.878378e-13	1.191817e-8	2.906870e-10
42	8004534	7950036	NM_005247	FGF3	0.628503	7.077309e-13	1.226285e-8	2.919727e-10
43	8004534	8035646	NM_023002	HAPLN4	0.628350	7.195330e-13	1.246735e-8	2.899383e-10
44	8004534	7929315	NM_183374	CYP26C1	0.627304	8.058566e-13	1.396308e-8	3.173427e-10
45	8004534	7998297	NM_153350	FBXL16	0.626033	9.241177e-13	1.601219e-8	3.558264e-10
46	8004534	8033414	NM_174895	PCP2	0.625485	9.802127e-13	1.698415e-8	3.692206e-10
47	8004534	8175732	NM_175742	MAGEA2	0.625352	9.942721e-13	1.722775e-8	3.665479e-10
48	8004534	8159318	NM_001145638	GPSM1	0.625236	1.006798e-12	1.744479e-8	3.634332e-10
49	8004534	8076302	NM_138481	CHADL	0.625210	1.009583e-12	1.749305e-8	3.570010e-10
50	8004534	8032088	NM_214710	PRSSL1	0.624867	1.047383e-12	1.814800e-8	3.629599e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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