[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
2507	8165723	NM_000451	SHOX		short stature homeobox
2508	8176297	NM_000451	SHOX		short stature homeobox

Fetching correlation data, please wait...
Getting list of correlations for id 2507.
Getting list of p-values for id 2507.
1 of 2 done.
Getting list of correlations for id 2508.
Getting list of p-values for id 2508.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.258 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165723	8176297	NM_000451	SHOX	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176297	8165723	NM_000451	SHOX	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8176297	8093826	NM_000683	ADRA2C	0.795414	3.900214e-24	1.351580e-19	4.505267e-20
4	8165723	8093826	NM_000683	ADRA2C	0.795414	3.900214e-24	1.351580e-19	3.378950e-20
5	8165723	7911413	NM_003327	TNFRSF4	0.767766	1.241603e-21	4.302651e-17	8.605303e-18
6	8176297	7911413	NM_003327	TNFRSF4	0.767766	1.241603e-21	4.302651e-17	7.171086e-18
7	8165723	7999841	NM_015092	SMG1	-0.760598	4.863255e-21	1.685312e-16	2.407589e-17
8	8176297	7999841	NM_015092	SMG1	-0.760598	4.863255e-21	1.685312e-16	2.106640e-17
9	8176297	7992181	NM_003294	TPSAB1	0.760544	4.912522e-21	1.702385e-16	1.891539e-17
10	8165723	7992181	NM_003294	TPSAB1	0.760544	4.912522e-21	1.702385e-16	1.702385e-17
11	8165723	8030721	NM_002975	CLEC11A	0.758608	7.044663e-21	2.441257e-16	2.219325e-17
12	8176297	8030721	NM_002975	CLEC11A	0.758608	7.044663e-21	2.441257e-16	2.034381e-17
13	8176297	8152148	NM_015902	UBR5	-0.757683	8.359769e-21	2.896995e-16	2.228457e-17
14	8165723	8152148	NM_015902	UBR5	-0.757683	8.359769e-21	2.896995e-16	2.069282e-17
15	8165723	7954969	NM_001114182	IRAK4	-0.754732	1.435325e-20	4.973976e-16	3.315984e-17
16	8176297	7954969	NM_001114182	IRAK4	-0.754732	1.435325e-20	4.973976e-16	3.108735e-17
17	8165723	7984641	NM_005744	ARIH1	-0.753761	1.712070e-20	5.933008e-16	3.490005e-17
18	8176297	7984641	NM_005744	ARIH1	-0.753761	1.712070e-20	5.933008e-16	3.296116e-17
19	8176297	8020141	NM_153000	APCDD1	0.753300	1.860779e-20	6.448344e-16	3.393865e-17
20	8165723	8020141	NM_153000	APCDD1	0.753300	1.860779e-20	6.448344e-16	3.224172e-17
21	8165723	7945162	NM_003658	BARX2	0.752839	2.022296e-20	7.008063e-16	3.337173e-17
22	8176297	7945162	NM_003658	BARX2	0.752839	2.022296e-20	7.008063e-16	3.185483e-17
23	8165723	8163972	NM_001100588	RC3H2	-0.751761	2.455024e-20	8.507639e-16	3.698973e-17
24	8176297	8163972	NM_001100588	RC3H2	-0.751761	2.455024e-20	8.507639e-16	3.544850e-17
25	8176297	8121209	NM_005604	POU3F2	0.749357	3.768734e-20	1.306017e-15	5.224068e-17
26	8165723	8121209	NM_005604	POU3F2	0.749357	3.768734e-20	1.306017e-15	5.023142e-17
27	8165723	8024323	NM_138393	REEP6	0.749166	3.898892e-20	1.351122e-15	5.004156e-17
28	8176297	8024323	NM_138393	REEP6	0.749166	3.898892e-20	1.351122e-15	4.825436e-17
29	8176297	7978718	NM_006364	SEC23A	-0.748933	4.062764e-20	1.407910e-15	4.854863e-17
30	8165723	7978718	NM_006364	SEC23A	-0.748933	4.062764e-20	1.407910e-15	4.693034e-17
31	8165723	8137330	ENST00000356058		0.748784	4.171001e-20	1.445419e-15	4.662641e-17
32	8176297	8137330	ENST00000356058		0.748784	4.171001e-20	1.445419e-15	4.516934e-17
33	8165723	8071276	NM_080647	TBX1	0.747058	5.653025e-20	1.958999e-15	5.936361e-17
34	8176297	8071276	NM_080647	TBX1	0.747058	5.653025e-20	1.958999e-15	5.761763e-17
35	8165723	8083282	NM_032383	HPS3	-0.747001	5.710198e-20	1.978812e-15	5.653749e-17
36	8176297	8083282	NM_032383	HPS3	-0.747001	5.710198e-20	1.978812e-15	5.496700e-17
37	8165723	8100251	NM_015030	FRYL	-0.746898	5.814011e-20	2.014787e-15	5.445371e-17
38	8176297	8100251	NM_015030	FRYL	-0.746898	5.814011e-20	2.014787e-15	5.302072e-17
39	8176297	8093112	NM_015562	UBXN7	-0.746521	6.210487e-20	2.152182e-15	5.518416e-17
40	8165723	8093112	NM_015562	UBXN7	-0.746521	6.210487e-20	2.152182e-15	5.380455e-17
41	8176297	8050719	NM_006277	ITSN2	-0.746208	6.560147e-20	2.273353e-15	5.544764e-17
42	8165723	8050719	NM_006277	ITSN2	-0.746208	6.560147e-20	2.273353e-15	5.412746e-17
43	8165723	8057990	NM_153697	ANKRD44	-0.746106	6.678471e-20	2.314357e-15	5.382226e-17
44	8176297	8057990	NM_153697	ANKRD44	-0.746106	6.678471e-20	2.314357e-15	5.259903e-17
45	8165723	7998434	NM_003294	TPSAB1	0.745987	6.818851e-20	2.363005e-15	5.251121e-17
46	8176297	7998434	NM_003294	TPSAB1	0.745987	6.818851e-20	2.363005e-15	5.136966e-17
47	8176297	7992845	NM_003456	ZNF205	0.745984	6.821671e-20	2.363982e-15	5.029749e-17
48	8165723	7992845	NM_003456	ZNF205	0.745984	6.821671e-20	2.363982e-15	4.924962e-17
49	8165723	7936762	NM_001001976	ATE1	-0.745770	7.081380e-20	2.453982e-15	5.008126e-17
50	8176297	7936762	NM_001001976	ATE1	-0.745770	7.081380e-20	2.453982e-15	4.907963e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation