[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6759	8011200	NM_052928	SMYD4		SET and MYND domain containing 4

Fetching correlation data, please wait...
Getting list of correlations for id 6759.
Getting list of p-values for id 6759.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.093 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8011200	8110685	NR_024158	LOC25845	0.533036	4.807229e-9	8.329485e-5	8.329485e-5
2	8011200	7996675	NM_020457	THAP11	0.450976	1.379849e-6	2.390865e-2	1.195432e-2
3	8011200	8180093	NM_002119	HLA-DOA	0.448548	1.596755e-6	2.766698e-2	9.222327e-3
4	8011200	8125545	NM_002119	HLA-DOA	0.448439	1.607177e-6	2.784755e-2	6.961888e-3
5	8011200	8170921	NM_017514	PLXNA3	0.436887	3.169378e-6	5.491581e-2	1.098316e-2
6	8011200	7945498	NM_021920	SCT	0.432286	4.125157e-6	7.147659e-2	1.191277e-2
7	8011200	8038877	NM_003830	SIGLEC5	-0.430778	4.493716e-6	7.786261e-2	1.112323e-2
8	8011200	7962689	NM_001017535	VDR	-0.427606	5.372678e-6	9.309239e-2	1.163655e-2
9	8011200	7979524	NM_001017970	TMEM30B	0.426766	5.631168e-6	9.757124e-2	1.084125e-2
10	8011200	7905754	NM_020452	ATP8B2	0.425554	6.024850e-6	1.043926e-1	1.043926e-2
11	8011200	8031207	NM_001130917	LILRA2	-0.425510	6.039903e-6	1.046534e-1	9.513945e-3
12	8011200	8035465	NM_016368	ISYNA1	0.417678	9.289677e-6	1.609622e-1	1.341352e-2
13	8011200	8003621	NM_018146	RNMTL1	0.416393	9.959436e-6	1.725671e-1	1.327440e-2
14	8011200	8016552	NM_002634	PHB	0.413180	1.183858e-5	2.051271e-1	1.465193e-2
15	8011200	8162276	NM_005384	NFIL3	-0.410954	1.333051e-5	2.309778e-1	1.539852e-2
16	8011200	8011193	NM_032895	C17orf91	-0.409910	1.408956e-5	2.441299e-1	1.525812e-2
17	8011200	8089519	NM_181780	BTLA	0.409842	1.414053e-5	2.450130e-1	1.441253e-2
18	8011200	8008087	NM_003204	NFE2L1	-0.409346	1.451653e-5	2.515280e-1	1.397378e-2
19	8011200	8070615	NM_018669	WDR4	0.409328	1.453038e-5	2.517678e-1	1.325094e-2
20	8011200	7960280	NM_152441	FBXL14	0.408528	1.515678e-5	2.626215e-1	1.313108e-2
21	8011200	7977584	NM_001100814	TMEM55B	0.406968	1.645332e-5	2.850866e-1	1.357555e-2
22	8011200	7923824	NM_173854	SLC41A1	0.405953	1.735112e-5	3.006429e-1	1.366559e-2
23	8011200	7926545	NM_032812	PLXDC2	-0.401575	2.178070e-5	3.773942e-1	1.640844e-2
24	8011200	8103240	NR_001562	ANXA2P1	-0.400503	2.301598e-5	3.987978e-1	1.661658e-2
25	8011200	8144557	NM_012331	MSRA	-0.400261	2.330376e-5	4.037842e-1	1.615137e-2
26	8011200	7960117	NM_018663	PXMP2	0.399023	2.483060e-5	4.302399e-1	1.654769e-2
27	8011200	7977653	ENST00000363232		-0.398463	2.555097e-5	4.427217e-1	1.639710e-2
28	8011200	8013222	NM_004618	TOP3A	-0.397257	2.717010e-5	4.707764e-1	1.681344e-2
29	8011200	7899849	ENST00000401937		0.396833	2.776317e-5	4.810525e-1	1.658802e-2
30	8011200	7930148	NM_178858	SFXN2	0.396238	2.861398e-5	4.957945e-1	1.652648e-2
31	8011200	8071691	NM_004327	BCR	0.394624	3.104547e-5	5.379248e-1	1.735241e-2
32	8011200	7965842			0.394235	3.166129e-5	5.485951e-1	1.714360e-2
33	8011200	7911854	NM_207306	KIAA0495	0.394091	3.189145e-5	5.525831e-1	1.674494e-2
34	8011200	8082254	NR_024251	LOC100125556	0.392950	3.377233e-5	5.851732e-1	1.721098e-2
35	8011200	8080487	NM_006254	PRKCD	-0.392895	3.386679e-5	5.868098e-1	1.676599e-2
36	8011200	8024299	NM_001018	RPS15	0.392761	3.409403e-5	5.907472e-1	1.640964e-2
37	8011200	7904465	NR_027337	HIST2H2BA	-0.391943	3.551893e-5	6.154365e-1	1.663342e-2
38	8011200	8018305	NM_016185	HN1	-0.391344	3.659874e-5	6.341463e-1	1.668806e-2
39	8011200	8074688	NM_030573	THAP7	0.389255	4.060408e-5	7.035469e-1	1.803966e-2
40	8011200	8042637	NM_001130978	DYSF	-0.389172	4.077315e-5	7.064764e-1	1.766191e-2
41	8011200	8171222	NM_001135565	HDHD1	0.387418	4.446339e-5	7.704171e-1	1.879066e-2
42	8011200	8046461	NM_133646	ZAK	-0.386203	4.720006e-5	8.178355e-1	1.947227e-2
43	8011200	7978166	NM_006405	TM9SF1	-0.386094	4.745416e-5	8.222382e-1	1.912182e-2
44	8011200	8066939	NM_004776	B4GALT5	-0.386067	4.751714e-5	8.233296e-1	1.871204e-2
45	8011200	8104601	NM_006317	BASP1	-0.384835	5.046960e-5	8.744868e-1	1.943304e-2
46	8011200	8134777	NM_024070	PVRIG	0.384460	5.140331e-5	8.906652e-1	1.936229e-2
47	8011200	7906133	NM_007221	PMF1	-0.384074	5.237996e-5	9.075875e-1	1.931037e-2
48	8011200	8137202	NM_001099220	ZNF862	0.383725	5.327697e-5	9.231301e-1	1.923188e-2
49	8011200	8033587	NM_032152	PRAM1	-0.383539	5.376277e-5	9.315476e-1	1.901117e-2
50	8011200	8078147	NM_000060	BTD	-0.383346	5.427037e-5	9.403427e-1	1.880685e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation