[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6031	8040070	NM_003108	SOX11		SRY (sex determining region Y)-box 11

Fetching correlation data, please wait...
Getting list of correlations for id 6031.
Getting list of p-values for id 6031.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.155 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8040070	7997765	NM_001127464	ZNF469	0.761478	4.123634e-21	7.145021e-17	7.145021e-17
2	8040070	8132092	NM_006774	INMT	0.753429	1.818049e-20	3.150133e-16	1.575066e-16
3	8040070	8067409	NM_005560	LAMA5	0.752425	2.178772e-20	3.775158e-16	1.258386e-16
4	8040070	7922756	NM_015039	NMNAT2	0.750750	2.941679e-20	5.097047e-16	1.274262e-16
5	8040070	8008201	NM_002507	NGFR	0.748182	4.638869e-20	8.037768e-16	1.607554e-16
6	8040070	8091048	NR_023350	COPB2	-0.744421	8.952953e-20	1.551278e-15	2.585464e-16
7	8040070	8074131	NM_001080420	SHANK3	0.743884	9.824290e-20	1.702255e-15	2.431792e-16
8	8040070	7914974	NM_000831	GRIK3	0.743739	1.007451e-19	1.745610e-15	2.182013e-16
9	8040070	7988987	NM_004498	ONECUT1	0.743706	1.013210e-19	1.755590e-15	1.950655e-16
10	8040070	8032214	NM_000156	GAMT	0.742196	1.313950e-19	2.276681e-15	2.276681e-16
11	8040070	8050719	NM_006277	ITSN2	-0.738733	2.368243e-19	4.103455e-15	3.730414e-16
12	8040070	8002592	NM_001030007	AP1G1	-0.738610	2.417852e-19	4.189412e-15	3.491177e-16
13	8040070	7947928	NM_031909	C1QTNF4	0.738402	2.504328e-19	4.339249e-15	3.337884e-16
14	8040070	8075126	NM_002430	MN1	0.737563	2.883801e-19	4.996762e-15	3.569115e-16
15	8040070	8073449	NM_014460	CSDC2	0.736739	3.311236e-19	5.737379e-15	3.824919e-16
16	8040070	8018922	NM_004762	CYTH1	-0.734401	4.885924e-19	8.465840e-15	5.291150e-16
17	8040070	8166500	NM_003410	ZFX	-0.733190	5.966749e-19	1.033859e-14	6.081521e-16
18	8040070	8094101	NM_001014448	CPZ	0.733014	6.142061e-19	1.064235e-14	5.912417e-16
19	8040070	8063211	NM_181659	NCOA3	-0.733005	6.151104e-19	1.065802e-14	5.609484e-16
20	8040070	8006690	NM_012138	AATF	-0.732686	6.482809e-19	1.123276e-14	5.616382e-16
21	8040070	7920766	NM_018489	ASH1L	-0.731096	8.409907e-19	1.457185e-14	6.938974e-16
22	8040070	8062427	NM_080607	VSTM2L	0.729710	1.053491e-18	1.825384e-14	8.297202e-16
23	8040070	8062492	NM_020336	RALGAPB	-0.729619	1.069078e-18	1.852392e-14	8.053877e-16
24	8040070	8126018	NM_007271	STK38	-0.729046	1.173066e-18	2.032572e-14	8.469050e-16
25	8040070	7945445	BC039077	C11orf35	0.727747	1.446121e-18	2.505694e-14	1.002277e-15
26	8040070	8004152	NM_015253	WSCD1	0.727648	1.469318e-18	2.545888e-14	9.791876e-16
27	8040070	7927028	NM_153368	GJD4	0.727256	1.564670e-18	2.711104e-14	1.004113e-15
28	8040070	8062880	NM_003404	YWHAB	-0.726962	1.640162e-18	2.841908e-14	1.014967e-15
29	8040070	8045090	NM_020120	UGGT1	-0.726744	1.698383e-18	2.942788e-14	1.014754e-15
30	8040070	7970602	NM_006437	PARP4	-0.726370	1.803098e-18	3.124227e-14	1.041409e-15
31	8040070	8005328	NM_016239	MYO15A	0.725200	2.172301e-18	3.763946e-14	1.214176e-15
32	8040070	8028325	NM_033520	C19orf33	0.724361	2.481629e-18	4.299918e-14	1.343724e-15
33	8040070	7942553	NM_014752	SPCS2	-0.723413	2.882418e-18	4.994366e-14	1.513444e-15
34	8040070	8152148	NM_015902	UBR5	-0.723341	2.915347e-18	5.051422e-14	1.485712e-15
35	8040070	7931643	NM_000773	CYP2E1	0.722294	3.437144e-18	5.955539e-14	1.701582e-15
36	8040070	7932495	NM_001010911	C10orf114	0.721845	3.688054e-18	6.390292e-14	1.775081e-15
37	8040070	8031489	NM_033113	ZNF628	0.721295	4.019320e-18	6.964275e-14	1.882237e-15
38	8040070	7942626	NM_003369	UVRAG	-0.721107	4.139084e-18	7.171792e-14	1.887314e-15
39	8040070	7899284	NM_001013642	TRNP1	0.720926	4.257288e-18	7.376602e-14	1.891437e-15
40	8040070	8031499	AF086519	SSC5D	0.720527	4.530667e-18	7.850286e-14	1.962572e-15
41	8040070	8040479	NM_182828	GDF7	0.720030	4.894359e-18	8.480457e-14	2.068404e-15
42	8040070	8017776	NM_014877	HELZ	-0.719996	4.920444e-18	8.525653e-14	2.029917e-15
43	8040070	8039605	NM_001005850	ZNF835	0.719995	4.920817e-18	8.526300e-14	1.982860e-15
44	8040070	7985920	NM_001039958	MESP2	0.719851	5.032010e-18	8.718964e-14	1.981583e-15
45	8040070	7949015	NM_001144936	C11orf95	0.718851	5.875065e-18	1.017973e-13	2.262161e-15
46	8040070	8110237	NM_133369	UNC5A	0.718129	6.567478e-18	1.137947e-13	2.473798e-15
47	8040070	8087951	NM_018165	PBRM1	-0.717470	7.268870e-18	1.259477e-13	2.679738e-15
48	8040070	8100251	NM_015030	FRYL	-0.717155	7.628621e-18	1.321811e-13	2.753773e-15
49	8040070	8098740	NM_033178	DUX4	0.716915	7.915405e-18	1.371502e-13	2.798984e-15
50	8040070	7991893	BC016613	C16orf11	0.716860	7.981569e-18	1.382966e-13	2.765933e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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