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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
640 8177635 NM_003187 TAF9 link to infopage TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa

Fetching correlation data, please wait...
Getting list of correlations for id 640.
Getting list of p-values for id 640.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8177635 7902634 NM_025065 RPF1 link to infopage 0.709424 2.450363e-17 4.245743e-13 4.245743e-13
2 8177635 7970569 NM_014363 SACS link to infopage 0.677552 2.066696e-15 3.580964e-11 1.790482e-11
3 8177635 8020898 NR_024565 ZNF271 link to infopage 0.667671 7.317004e-15 1.267817e-10 4.226057e-11
4 8177635 8069532 NM_006948 HSPA13 link to infopage 0.665997 9.021900e-15 1.563225e-10 3.908062e-11
5 8177635 7950544 NM_004705 PRKRIR link to infopage 0.665316 9.821349e-15 1.701745e-10 3.403490e-11
6 8177635 7975224 NM_004094 EIF2S1 link to infopage 0.664255 1.120379e-14 1.941280e-10 3.235467e-11
7 8177635 8144894 NM_018142 INTS10 link to infopage 0.661468 1.579426e-14 2.736671e-10 3.909530e-11
8 8177635 7917088 NM_005482 PIGK link to infopage 0.661133 1.645621e-14 2.851368e-10 3.564210e-11
9 8177635 8114193 NM_001033503 SAR1B link to infopage 0.660510 1.775945e-14 3.077180e-10 3.419089e-11
10 8177635 7974303 NM_030755 TMX1 link to infopage 0.660420 1.795642e-14 3.111308e-10 3.111308e-11
11 8177635 8171747 NM_001412 EIF1AX link to infopage 0.659468 2.016486e-14 3.493965e-10 3.176332e-11
12 8177635 8128429 NM_005190 CCNC link to infopage 0.658240 2.340556e-14 4.055481e-10 3.379567e-11
13 8177635 8097647 NM_002940 ABCE1 link to infopage 0.656664 2.831160e-14 4.905551e-10 3.773501e-11
14 8177635 8047815 NM_001136194 FASTKD2 link to infopage 0.655384 3.301410e-14 5.720352e-10 4.085966e-11
15 8177635 7913712 NM_006625 SRSF10 link to infopage 0.654987 3.462085e-14 5.998754e-10 3.999169e-11
16 8177635 7917604 NM_201269 ZNF644 link to infopage 0.654394 3.716128e-14 6.438935e-10 4.024334e-11
17 8177635 7947221 NM_018362 LIN7C link to infopage 0.654082 3.857035e-14 6.683085e-10 3.931226e-11
18 8177635 7986769 NM_130839 UBE3A link to infopage 0.654066 3.864368e-14 6.695790e-10 3.719883e-11
19 8177635 8078270 NM_002948 RPL15 link to infopage 0.653927 3.928881e-14 6.807573e-10 3.582933e-11
20 8177635 8041867 NM_000251 MSH2 link to infopage 0.653701 4.036379e-14 6.993834e-10 3.496917e-11
21 8177635 7926609 NM_005180 BMI1 link to infopage 0.653436 4.165657e-14 7.217834e-10 3.437064e-11
22 8177635 7956910 NM_018448 CAND1 link to infopage 0.653058 4.356769e-14 7.548974e-10 3.431352e-11
23 8177635 8084694 NM_001967 EIF4A2 link to infopage 0.652100 4.881020e-14 8.457344e-10 3.677106e-11
24 8177635 8136631 NM_003143 SSBP1 link to infopage 0.651621 5.165437e-14 8.950152e-10 3.729230e-11
25 8177635 8147439 NM_024613 PLEKHF2 link to infopage 0.651453 5.269011e-14 9.129616e-10 3.651846e-11
26 8177635 8121161 NM_015323 KIAA0776 link to infopage 0.650284 6.046522e-14 1.047681e-9 4.029542e-11
27 8177635 8150818 NM_006756 TCEA1 link to infopage 0.649853 6.360409e-14 1.102068e-9 4.081734e-11
28 8177635 7971820 NM_016075 VPS36 link to infopage 0.649818 6.386317e-14 1.106557e-9 3.951990e-11
29 8177635 7954021 NM_001310 CREBL2 link to infopage 0.647540 8.333837e-14 1.444004e-9 4.979324e-11
30 8177635 7902594 NM_182948 PRKACB link to infopage 0.646049 9.907889e-14 1.716740e-9 5.722466e-11
31 8177635 8009366 NM_015462 NOL11 link to infopage 0.645740 1.026851e-13 1.779225e-9 5.739437e-11
32 8177635 8112007 NM_198449 EMB link to infopage 0.645617 1.041477e-13 1.804568e-9 5.639274e-11
33 8177635 8092564 NM_004593 TRA2B link to infopage 0.644988 1.119917e-13 1.940480e-9 5.880242e-11
34 8177635 7918813 NM_002524 NRAS link to infopage 0.644373 1.202020e-13 2.082739e-9 6.125704e-11
35 8177635 8090678 NM_007208 MRPL3 link to infopage 0.643064 1.396793e-13 2.420223e-9 6.914924e-11
36 8177635 7902367 NM_000016 ACADM link to infopage 0.642894 1.424205e-13 2.467720e-9 6.854778e-11
37 8177635 7971541 NM_003850 SUCLA2 link to infopage 0.642829 1.434788e-13 2.486057e-9 6.719072e-11
38 8177635 7973840 NM_001030055 ARHGAP5 link to infopage 0.642517 1.486893e-13 2.576340e-9 6.779843e-11
39 8177635 7969703 NM_002271 IPO5 link to infopage 0.642202 1.541416e-13 2.670811e-9 6.848233e-11
40 8177635 7916969 NM_005455 ZRANB2 link to infopage 0.641238 1.720103e-13 2.980423e-9 7.451057e-11
41 8177635 8096808 NM_017918 CCDC109B link to infopage 0.640839 1.799942e-13 3.118760e-9 7.606731e-11
42 8177635 7971967 NM_014953 DIS3 link to infopage 0.640521 1.866074e-13 3.233347e-9 7.698445e-11
43 8177635 8056426 NM_024753 TTC21B link to infopage 0.639828 2.018373e-13 3.497235e-9 8.133105e-11
44 8177635 8062211 NM_032194 RPF2 link to infopage 0.639419 2.113883e-13 3.662724e-9 8.324373e-11
45 8177635 7912852 NM_001412 EIF1AX link to infopage 0.638656 2.303724e-13 3.991662e-9 8.870361e-11
46 8177635 8104760 NM_152295 TARS link to infopage 0.638128 2.444829e-13 4.236155e-9 9.209033e-11
47 8177635 7916928 NM_030816 ANKRD13C link to infopage 0.638069 2.461040e-13 4.264244e-9 9.072859e-11
48 8177635 8091562 NM_020865 DHX36 link to infopage 0.637607 2.592076e-13 4.491290e-9 9.356855e-11
49 8177635 7924351 NM_004446 EPRS link to infopage 0.637487 2.627047e-13 4.551885e-9 9.289561e-11
50 8177635 7974146 NM_017922 PRPF39 link to infopage 0.637351 2.667337e-13 4.621695e-9 9.243391e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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