[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5255	7984190	NM_016213	TRIP4		thyroid hormone receptor interactor 4

Fetching correlation data, please wait...
Getting list of correlations for id 5255.
Getting list of p-values for id 5255.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7984190	8080923	NM_002802	PSMC1	0.799610	1.505350e-24	2.608319e-20	2.608319e-20
2	7984190	7976189	NM_002802	PSMC1	0.788036	1.973936e-23	3.420238e-19	1.710119e-19
3	7984190	8023672	NM_004869	VPS4B	0.767728	1.250634e-21	2.166973e-17	7.223243e-18
4	7984190	7917707	NM_005665	EVI5	0.761223	4.325843e-21	7.495389e-17	1.873847e-17
5	7984190	8055890	NM_005843	STAM2	0.760488	4.964162e-21	8.601404e-17	1.720281e-17
6	7984190	7905099	NM_007259	VPS45	0.759397	6.084741e-21	1.054303e-16	1.757172e-17
7	7984190	8176255	NM_018196	TMLHE	0.758781	6.822445e-21	1.182125e-16	1.688750e-17
8	7984190	8138581	NM_013293	TRA2A	0.756416	1.055234e-20	1.828403e-16	2.285504e-17
9	7984190	7935707	NM_001278	CHUK	0.756251	1.087694e-20	1.884647e-16	2.094053e-17
10	7984190	8075130	NM_012399	PITPNB	0.756094	1.119525e-20	1.939801e-16	1.939801e-17
11	7984190	8146243	NM_032410	HOOK3	0.755987	1.141537e-20	1.977942e-16	1.798129e-17
12	7984190	7971550	NM_014166	MED4	0.755189	1.320769e-20	2.288496e-16	1.907080e-17
13	7984190	8082688	NM_015268	DNAJC13	0.751916	2.387666e-20	4.137109e-16	3.182392e-17
14	7984190	8121429	NM_014845	FIG4	0.750968	2.829308e-20	4.902342e-16	3.501673e-17
15	7984190	8097704	NM_018241	TMEM184C	0.749296	3.809597e-20	6.600888e-16	4.400592e-17
16	7984190	7907492	NM_014857	RABGAP1L	0.748635	4.282457e-20	7.420213e-16	4.637633e-17
17	7984190	8028872	NM_001042544	LTBP4	-0.748570	4.332100e-20	7.506230e-16	4.415430e-17
18	7984190	8091048	NR_023350	COPB2	0.747797	4.965014e-20	8.602879e-16	4.779377e-17
19	7984190	8129590	NM_003569	STX7	0.747668	5.078849e-20	8.800121e-16	4.631643e-17
20	7984190	8102006	NM_005908	MANBA	0.745605	7.287656e-20	1.262732e-15	6.313661e-17
21	7984190	8089527	NM_022488	ATG3	0.745557	7.348918e-20	1.273347e-15	6.063557e-17
22	7984190	8134122	NM_005751	AKAP9	0.744491	8.845027e-20	1.532578e-15	6.966263e-17
23	7984190	7979473	NM_016029	DHRS7	0.744345	9.072453e-20	1.571984e-15	6.834713e-17
24	7984190	8021015	NM_002647	PIK3C3	0.744233	9.249292e-20	1.602625e-15	6.677604e-17
25	7984190	7932041	NM_080599	UPF2	0.743969	9.681020e-20	1.677430e-15	6.709721e-17
26	7984190	8053562	NM_016079	VPS24	0.743587	1.034254e-19	1.792052e-15	6.892508e-17
27	7984190	7932000	NM_012311	KIN	0.743366	1.074347e-19	1.861520e-15	6.894520e-17
28	7984190	8014081	NM_018428	UTP6	0.742121	1.330932e-19	2.306106e-15	8.236092e-17
29	7984190	8135464	NM_000108	DLD	0.741497	1.480851e-19	2.565871e-15	8.847830e-17
30	7984190	8041913	NR_024188	KLRAQ1	0.740929	1.631754e-19	2.827341e-15	9.424470e-17
31	7984190	7919800	NM_004079	CTSS	0.740050	1.894953e-19	3.283385e-15	1.059157e-16
32	7984190	7909931	NM_144695	C1orf58	0.738643	2.404701e-19	4.166625e-15	1.302070e-16
33	7984190	8023481	NM_004539	NARS	0.738276	2.557985e-19	4.432221e-15	1.343097e-16
34	7984190	8119408	NM_002505	NFYA	0.737752	2.793988e-19	4.841143e-15	1.423866e-16
35	7984190	8106976	NM_199243	GPR150	-0.736842	3.254585e-19	5.639220e-15	1.611206e-16
36	7984190	8050658	NM_017552	ATAD2B	0.736264	3.584829e-19	6.211433e-15	1.725398e-16
37	7984190	7932616	NM_005470	ABI1	0.735321	4.194055e-19	7.267040e-15	1.964065e-16
38	7984190	8112772	NM_003664	AP3B1	0.734776	4.591079e-19	7.954962e-15	2.093411e-16
39	7984190	8168472	NM_000052	ATP7A	0.734081	5.151559e-19	8.926106e-15	2.288745e-16
40	7984190	8086008	NM_016141	DYNC1LI1	0.733911	5.297616e-19	9.179179e-15	2.294795e-16
41	7984190	7922707	NM_021133	RNASEL	0.733812	5.385172e-19	9.330888e-15	2.275826e-16
42	7984190	8020903	NM_020474	GALNT1	0.733504	5.665878e-19	9.817267e-15	2.337444e-16
43	7984190	7974603	NM_002788	PSMA3	0.733469	5.698950e-19	9.874570e-15	2.296412e-16
44	7984190	8121461	NM_015891	CDC40	0.733077	6.079332e-19	1.053366e-14	2.394013e-16
45	7984190	8081256	NM_018309	TBC1D23	0.732716	6.450621e-19	1.117699e-14	2.483776e-16
46	7984190	8096385	NM_014606	HERC3	0.732318	6.886516e-19	1.193227e-14	2.593971e-16
47	7984190	7913814	NM_015484	SYF2	0.730953	8.607421e-19	1.491408e-14	3.173208e-16
48	7984190	7942839	NM_015885	PCF11	0.730857	8.744044e-19	1.515080e-14	3.156418e-16
49	7984190	7900395	NM_012421	RLF	0.730657	9.032555e-19	1.565071e-14	3.194022e-16
50	7984190	8113130	NM_024717	MCTP1	0.729275	1.130291e-18	1.958456e-14	3.916911e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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