[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7446	8152453	NM_014112	TRPS1		trichorhinophalangeal syndrome I

Fetching correlation data, please wait...
Getting list of correlations for id 7446.
Getting list of p-values for id 7446.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.154 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8152453	8072015	NM_005160	ADRBK2	0.819444	1.205948e-26	2.089546e-22	2.089546e-22
2	8152453	8114225	NM_004893	H2AFY	0.793500	5.977984e-24	1.035805e-19	5.179026e-20
3	8152453	8023481	NM_004539	NARS	0.789601	1.407117e-23	2.438112e-19	8.127041e-20
4	8152453	8141107	NM_001160210	SLC25A13	0.786940	2.497774e-23	4.327893e-19	1.081973e-19
5	8152453	7938422	NM_014633	CTR9	0.783671	4.999095e-23	8.661932e-19	1.732386e-19
6	8152453	8048847	NM_001135187	AGFG1	0.781215	8.354026e-23	1.447502e-18	2.412503e-19
7	8152453	8045090	NM_020120	UGGT1	0.781114	8.531754e-23	1.478297e-18	2.111853e-19
8	8152453	8152782	NM_014846	KIAA0196	0.778652	1.417582e-22	2.456244e-18	3.070306e-19
9	8152453	8154254	NM_020829	KIAA1432	0.772249	5.154604e-22	8.931382e-18	9.923758e-19
10	8152453	7999496	NM_014153	ZC3H7A	0.769307	9.197299e-22	1.593616e-17	1.593616e-18
11	8152453	8008834	NM_004859	CLTC	0.768883	9.990947e-22	1.731131e-17	1.573756e-18
12	8152453	8119067	NM_173562	KCTD20	0.767673	1.264082e-21	2.190274e-17	1.825229e-18
13	8152453	8009205	NM_007372	DDX42	0.766412	1.612922e-21	2.794709e-17	2.149776e-18
14	8152453	8017421	NM_020198	CCDC47	0.764630	2.269877e-21	3.933016e-17	2.809297e-18
15	8152453	7970602	NM_006437	PARP4	0.763588	2.767999e-21	4.796113e-17	3.197408e-18
16	8152453	8052269	NM_001135597	CCDC88A	0.760156	5.282345e-21	9.152719e-17	5.720450e-18
17	8152453	7927146	NM_018590	CSGALNACT2	0.759428	6.049583e-21	1.048211e-16	6.165948e-18
18	8152453	8082688	NM_015268	DNAJC13	0.757780	8.210399e-21	1.422616e-16	7.903421e-18
19	8152453	7990231	NR_023318	ADPGK	0.756124	1.113348e-20	1.929098e-16	1.015315e-17
20	8152453	8086077	NM_015097	CLASP2	0.755554	1.235745e-20	2.141175e-16	1.070587e-17
21	8152453	7943176	NM_004268	MED17	0.755178	1.323430e-20	2.293107e-16	1.091956e-17
22	8152453	8040639	NM_000183	HADHB	0.753585	1.767407e-20	3.062387e-16	1.391994e-17
23	8152453	8087951	NM_018165	PBRM1	0.753101	1.928798e-20	3.342029e-16	1.453056e-17
24	8152453	8103206	NM_033632	FBXW7	0.752115	2.303898e-20	3.991965e-16	1.663319e-17
25	8152453	8091009	NM_006219	PIK3CB	0.750581	3.031783e-20	5.253170e-16	2.101268e-17
26	8152453	7945132	NM_002017	FLI1	0.750428	3.115689e-20	5.398554e-16	2.076367e-17
27	8152453	7917707	NM_005665	EVI5	0.750078	3.315791e-20	5.745271e-16	2.127878e-17
28	8152453	8006638	NM_024835	GGNBP2	0.750057	3.328413e-20	5.767140e-16	2.059693e-17
29	8152453	8145636	NM_024567	HMBOX1	0.748787	4.169287e-20	7.224123e-16	2.491077e-17
30	8152453	8085852	NM_018297	NGLY1	0.745643	7.239990e-20	1.254473e-15	4.181577e-17
31	8152453	8061986	NM_031483	ITCH	0.745366	7.598060e-20	1.316516e-15	4.246825e-17
32	8152453	7993680	BC050464	C16orf62	0.744933	8.191827e-20	1.419398e-15	4.435618e-17
33	8152453	8061186	NM_006363	SEC23B	0.744644	8.613581e-20	1.492475e-15	4.522652e-17
34	8152453	7966268	NM_057169	GIT2	0.744552	8.751980e-20	1.516456e-15	4.460163e-17
35	8152453	8021208	NM_002396	ME2	0.744530	8.785930e-20	1.522338e-15	4.349537e-17
36	8152453	8014081	NM_018428	UTP6	0.743958	9.699864e-20	1.680695e-15	4.668598e-17
37	8152453	7947027	NM_001040697	UEVLD	0.743092	1.126403e-19	1.951719e-15	5.274917e-17
38	8152453	8002592	NM_001030007	AP1G1	0.742231	1.306089e-19	2.263061e-15	5.955423e-17
39	8152453	7995382	NM_001031835	PHKB	0.742053	1.346397e-19	2.332903e-15	5.981801e-17
40	8152453	8152148	NM_015902	UBR5	0.741456	1.491422e-19	2.584187e-15	6.460466e-17
41	8152453	8146243	NM_032410	HOOK3	0.741213	1.554531e-19	2.693537e-15	6.569601e-17
42	8152453	8068289	NM_138927	SON	0.741136	1.575081e-19	2.729143e-15	6.497959e-17
43	8152453	8168691	NM_006729	DIAPH2	0.741136	1.575249e-19	2.729434e-15	6.347521e-17
44	8152453	8106122	NM_002270	TNPO1	0.740529	1.746813e-19	3.026702e-15	6.878869e-17
45	8152453	8095163	NM_001024924	EXOC1	0.739736	1.998558e-19	3.462901e-15	7.695335e-17
46	8152453	8049827	NM_001008492	SEPT2	0.738515	2.457152e-19	4.257508e-15	9.255452e-17
47	8152453	8102006	NM_005908	MANBA	0.737050	3.143374e-19	5.446525e-15	1.158835e-16
48	8152453	8040142	NM_016207	CPSF3	0.736195	3.626078e-19	6.282906e-15	1.308939e-16
49	8152453	8163275	NM_001080398	KIAA0368	0.735993	3.750373e-19	6.498272e-15	1.326178e-16
50	8152453	7985166	NM_004136	IREB2	0.735879	3.822488e-19	6.623224e-15	1.324645e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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