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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3338 8171240 NM_016378 VCX2 link to infopage variable charge, X-linked 2

Fetching correlation data, please wait...
Getting list of correlations for id 3338.
Getting list of p-values for id 3338.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8171240 8171216 NM_016379 VCX3A link to infopage 0.956089 1.030076e-56 1.784812e-52 1.784812e-52
2 8171240 8165890 NM_001001888 VCX3B link to infopage 0.901913 2.424620e-39 4.201138e-35 2.100569e-35
3 8171240 8165881 NM_013452 VCX link to infopage 0.852024 1.025895e-30 1.777568e-26 5.925226e-27
4 8171240 8097128 NM_001034194 EXOSC9 link to infopage -0.823630 4.036128e-27 6.993399e-23 1.748350e-23
5 8171240 7924351 NM_004446 EPRS link to infopage -0.799628 1.498975e-24 2.597274e-20 5.194548e-21
6 8171240 7913571 NM_001102398 HNRNPR link to infopage -0.794623 4.655755e-24 8.067027e-20 1.344505e-20
7 8171240 7999562 NM_002582 PARN link to infopage -0.793161 6.444817e-24 1.116693e-19 1.595276e-20
8 8171240 8154333 NM_015061 KDM4C link to infopage -0.793125 6.495058e-24 1.125399e-19 1.406748e-20
9 8171240 8156718 NM_002486 NCBP1 link to infopage -0.792326 7.750716e-24 1.342967e-19 1.492185e-20
10 8171240 7916443 NM_015306 USP24 link to infopage -0.792237 7.903884e-24 1.369506e-19 1.369506e-20
11 8171240 7930380 NM_016824 ADD3 link to infopage -0.792230 7.916536e-24 1.371698e-19 1.246998e-20
12 8171240 8136401 NM_015135 NUP205 link to infopage -0.791062 1.023153e-23 1.772818e-19 1.477348e-20
13 8171240 8054614 NM_022662 ANAPC1 link to infopage -0.790803 1.082624e-23 1.875862e-19 1.442971e-20
14 8171240 8051670 NM_005633 SOS1 link to infopage -0.789683 1.382168e-23 2.394883e-19 1.710631e-20
15 8171240 8029377 NM_013398 ZNF224 link to infopage -0.789121 1.561401e-23 2.705440e-19 1.803626e-20
16 8171240 8107066 NM_005575 LNPEP link to infopage -0.789000 1.602986e-23 2.777493e-19 1.735933e-20
17 8171240 8097373 BC034253 C4orf29 link to infopage -0.788226 1.894686e-23 3.282923e-19 1.931131e-20
18 8171240 8163733 NM_018249 CDK5RAP2 link to infopage -0.788039 1.972602e-23 3.417928e-19 1.898849e-20
19 8171240 7925978 NM_017782 C10orf18 link to infopage -0.787355 2.284958e-23 3.959147e-19 2.083762e-20
20 8171240 8176650 NM_004679 VCY link to infopage 0.787211 2.356960e-23 4.083904e-19 2.041952e-20
21 8171240 8177169 NM_004679 VCY link to infopage 0.787211 2.356960e-23 4.083904e-19 1.944716e-20
22 8171240 8057719 NM_014362 HIBCH link to infopage -0.785521 3.380455e-23 5.857314e-19 2.662416e-20
23 8171240 8108134 NM_014829 DDX46 link to infopage -0.784475 4.219651e-23 7.311389e-19 3.178865e-20
24 8171240 8051464 NM_019024 HEATR5B link to infopage -0.782859 5.927824e-23 1.027114e-18 4.279642e-20
25 8171240 8100251 NM_015030 FRYL link to infopage -0.781350 8.123120e-23 1.407493e-18 5.629972e-20
26 8171240 8078569 NM_002078 GOLGA4 link to infopage -0.781156 8.456431e-23 1.465246e-18 5.635561e-20
27 8171240 7917156 NM_003902 FUBP1 link to infopage -0.780561 9.567910e-23 1.657832e-18 6.140118e-20
28 8171240 7903239 NM_000028 AGL link to infopage -0.779445 1.204604e-22 2.087217e-18 7.454347e-20
29 8171240 8091562 NM_020865 DHX36 link to infopage -0.779332 1.232818e-22 2.136104e-18 7.365876e-20
30 8171240 8117140 NM_017774 CDKAL1 link to infopage -0.779314 1.237351e-22 2.143958e-18 7.146525e-20
31 8171240 7987325 NM_014691 AQR link to infopage -0.778429 1.483954e-22 2.571248e-18 8.294347e-20
32 8171240 8023228 NM_017653 DYM link to infopage -0.777465 1.806577e-22 3.130256e-18 9.782050e-20
33 8171240 7961767 AK295862 KIAA0528 link to infopage -0.777393 1.833381e-22 3.176698e-18 9.626359e-20
34 8171240 8160622 NM_018225 SMU1 link to infopage -0.776985 1.992005e-22 3.451547e-18 1.015161e-19
35 8171240 7924190 NM_144567 ANGEL2 link to infopage -0.775809 2.527886e-22 4.380068e-18 1.251448e-19
36 8171240 7968931 NM_031431 COG3 link to infopage -0.775457 2.714105e-22 4.702729e-18 1.306314e-19
37 8171240 8046590 NM_194247 HNRNPA3 link to infopage -0.774581 3.237204e-22 5.609103e-18 1.515974e-19
38 8171240 8006377 NM_001098507 ZNF207 link to infopage -0.774124 3.547640e-22 6.146996e-18 1.617630e-19
39 8171240 8021312 NM_015285 WDR7 link to infopage -0.773865 3.736270e-22 6.473834e-18 1.659958e-19
40 8171240 7955019 NM_152641 ARID2 link to infopage -0.773555 3.974913e-22 6.887331e-18 1.721833e-19
41 8171240 7994161 NM_006910 RBBP6 link to infopage -0.772651 4.758712e-22 8.245421e-18 2.011078e-19
42 8171240 8114193 NM_001033503 SAR1B link to infopage -0.772513 4.890944e-22 8.474538e-18 2.017747e-19
43 8171240 8116664 NM_003913 PRPF4B link to infopage -0.771632 5.824407e-22 1.009195e-17 2.346965e-19
44 8171240 8107474 NM_005509 DMXL1 link to infopage -0.771501 5.976525e-22 1.035552e-17 2.353528e-19
45 8171240 8150928 NM_003580 NSMAF link to infopage -0.771249 6.281353e-22 1.088370e-17 2.418600e-19
46 8171240 8174893 NM_001081550 THOC2 link to infopage -0.770995 6.604768e-22 1.144408e-17 2.487844e-19
47 8171240 8046975 NM_032168 WDR75 link to infopage -0.770557 7.198632e-22 1.247307e-17 2.653844e-19
48 8171240 7956910 NM_018448 CAND1 link to infopage -0.770039 7.970572e-22 1.381061e-17 2.877210e-19
49 8171240 8086985 NM_000094 COL7A1 link to infopage 0.769820 8.320453e-22 1.441685e-17 2.942214e-19
50 8171240 8085571 NM_152396 METTL6 link to infopage -0.769380 9.067968e-22 1.571207e-17 3.142414e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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