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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
2110 8171216 NM_016379 VCX3A link to infopage variable charge, X-linked 3A

Fetching correlation data, please wait...
Getting list of correlations for id 2110.
Getting list of p-values for id 2110.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8171216 8165890 NM_001001888 VCX3B link to infopage 0.961209 1.976035e-59 3.423877e-55 3.423877e-55
2 8171216 8171240 NM_016378 VCX2 link to infopage 0.956089 1.030076e-56 1.784812e-52 8.924062e-53
3 8171216 8165881 NM_013452 VCX link to infopage 0.880933 3.032794e-35 5.254922e-31 1.751641e-31
4 8171216 8101099 NM_018115 SDAD1 link to infopage -0.800088 1.348548e-24 2.336628e-20 5.841571e-21
5 8171216 8097128 NM_001034194 EXOSC9 link to infopage -0.799193 1.656189e-24 2.869679e-20 5.739358e-21
6 8171216 8177169 NM_004679 VCY link to infopage 0.798462 1.957536e-24 3.391823e-20 5.653038e-21
7 8171216 8176650 NM_004679 VCY link to infopage 0.798462 1.957536e-24 3.391823e-20 4.845461e-21
8 8171216 8107066 NM_005575 LNPEP link to infopage -0.798148 2.102447e-24 3.642910e-20 4.553637e-21
9 8171216 7913571 NM_001102398 HNRNPR link to infopage -0.794460 4.827962e-24 8.365410e-20 9.294900e-21
10 8171216 8054614 NM_022662 ANAPC1 link to infopage -0.793754 5.650108e-24 9.789942e-20 9.789942e-21
11 8171216 7961767 AK295862 KIAA0528 link to infopage -0.791900 8.511269e-24 1.474748e-19 1.340680e-20
12 8171216 8154333 NM_015061 KDM4C link to infopage -0.791396 9.508427e-24 1.647525e-19 1.372938e-20
13 8171216 8097373 BC034253 C4orf29 link to infopage -0.790793 1.085140e-23 1.880222e-19 1.446325e-20
14 8171216 8078569 NM_002078 GOLGA4 link to infopage -0.789696 1.378149e-23 2.387919e-19 1.705656e-20
15 8171216 8051670 NM_005633 SOS1 link to infopage -0.789282 1.507689e-23 2.612373e-19 1.741582e-20
16 8171216 8045381 NM_058241 CCNT2 link to infopage -0.786463 2.765689e-23 4.792109e-19 2.995068e-20
17 8171216 7955019 NM_152641 ARID2 link to infopage -0.785857 3.147553e-23 5.453766e-19 3.208098e-20
18 8171216 7994161 NM_006910 RBBP6 link to infopage -0.785243 3.586124e-23 6.213676e-19 3.452042e-20
19 8171216 7987869 NM_015497 TMEM87A link to infopage -0.784973 3.797084e-23 6.579207e-19 3.462741e-20
20 8171216 8117140 NM_017774 CDKAL1 link to infopage -0.784716 4.009724e-23 6.947649e-19 3.473824e-20
21 8171216 8086985 NM_000094 COL7A1 link to infopage 0.784014 4.650949e-23 8.058699e-19 3.837476e-20
22 8171216 8023228 NM_017653 DYM link to infopage -0.783970 4.693942e-23 8.133193e-19 3.696906e-20
23 8171216 8091562 NM_020865 DHX36 link to infopage -0.783860 4.804243e-23 8.324312e-19 3.619266e-20
24 8171216 8020814 NM_016271 RNF138 link to infopage -0.783530 5.149306e-23 8.922203e-19 3.717584e-20
25 8171216 8136401 NM_015135 NUP205 link to infopage -0.783457 5.229194e-23 9.060625e-19 3.624250e-20
26 8171216 7930380 NM_016824 ADD3 link to infopage -0.783143 5.585455e-23 9.677917e-19 3.722276e-20
27 8171216 7937560 NM_002457 MUC2 link to infopage 0.783007 5.746803e-23 9.957486e-19 3.687958e-20
28 8171216 7999562 NM_002582 PARN link to infopage -0.780669 9.355406e-23 1.621011e-18 5.789326e-20
29 8171216 7917156 NM_003902 FUBP1 link to infopage -0.780647 9.398253e-23 1.628435e-18 5.615294e-20
30 8171216 7903239 NM_000028 AGL link to infopage -0.780105 1.051317e-22 1.821617e-18 6.072058e-20
31 8171216 8166956 NM_021140 KDM6A link to infopage -0.779789 1.122041e-22 1.944161e-18 6.271487e-20
32 8171216 8108134 NM_014829 DDX46 link to infopage -0.779589 1.169253e-22 2.025965e-18 6.331139e-20
33 8171216 8005328 NM_016239 MYO15A link to infopage 0.779474 1.197410e-22 2.074753e-18 6.287129e-20
34 8171216 8046975 NM_032168 WDR75 link to infopage -0.778450 1.477444e-22 2.559968e-18 7.529318e-20
35 8171216 8051464 NM_019024 HEATR5B link to infopage -0.778368 1.502399e-22 2.603206e-18 7.437731e-20
36 8171216 8160622 NM_018225 SMU1 link to infopage -0.777661 1.735952e-22 3.007885e-18 8.355236e-20
37 8171216 7946703 NM_016451 COPB1 link to infopage -0.776048 2.408528e-22 4.173256e-18 1.127907e-19
38 8171216 7924351 NM_004446 EPRS link to infopage -0.776017 2.423709e-22 4.199560e-18 1.105147e-19
39 8171216 8083429 NM_021038 MBNL1 link to infopage -0.775444 2.721248e-22 4.715107e-18 1.209002e-19
40 8171216 8006377 NM_001098507 ZNF207 link to infopage -0.774979 2.988357e-22 5.177926e-18 1.294481e-19
41 8171216 8156861 NM_017919 STX17 link to infopage -0.774868 3.055746e-22 5.294690e-18 1.291388e-19
42 8171216 8051882 NM_133259 LRPPRC link to infopage -0.774846 3.069189e-22 5.317983e-18 1.266187e-19
43 8171216 8106534 NM_001114394 PAPD4 link to infopage -0.773519 4.003504e-22 6.936871e-18 1.613226e-19
44 8171216 7956910 NM_018448 CAND1 link to infopage -0.773398 4.101045e-22 7.105880e-18 1.614973e-19
45 8171216 7925978 NM_017782 C10orf18 link to infopage -0.772731 4.684046e-22 8.116047e-18 1.803566e-19
46 8171216 7987325 NM_014691 AQR link to infopage -0.772527 4.877665e-22 8.451531e-18 1.837289e-19
47 8171216 8083183 NM_001080415 SR140 link to infopage -0.771750 5.689561e-22 9.858302e-18 2.097511e-19
48 8171216 8096538 NM_001100426 RAP1GDS1 link to infopage -0.771579 5.886158e-22 1.019895e-17 2.124780e-19
49 8171216 8084986 NM_032288 FYTTD1 link to infopage -0.771444 6.044503e-22 1.047331e-17 2.137410e-19
50 8171216 7929201 NM_003972 BTAF1 link to infopage -0.771272 6.253258e-22 1.083502e-17 2.167004e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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