[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4180	8176650	NM_004679	VCY		variable charge, Y-linked
4181	8177169	NM_004679	VCY		variable charge, Y-linked

Fetching correlation data, please wait...
Getting list of correlations for id 4180.
Getting list of p-values for id 4180.
1 of 2 done.
Getting list of correlations for id 4181.
Getting list of p-values for id 4181.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.211 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177169	8176650	NM_004679	VCY	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176650	8177169	NM_004679	VCY	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8177169	8165890	NM_001001888	VCX3B	0.798879	1.779742e-24	6.167517e-20	2.055839e-20
4	8176650	8165890	NM_001001888	VCX3B	0.798879	1.779742e-24	6.167517e-20	1.541879e-20
5	8176650	8171216	NM_016379	VCX3A	0.798462	1.957536e-24	6.783645e-20	1.356729e-20
6	8177169	8171216	NM_016379	VCX3A	0.798462	1.957536e-24	6.783645e-20	1.130608e-20
7	8176650	8171240	NM_016378	VCX2	0.787211	2.356960e-23	8.167808e-19	1.166830e-19
8	8177169	8171240	NM_016378	VCX2	0.787211	2.356960e-23	8.167808e-19	1.020976e-19
9	8176650	8165881	NM_013452	VCX	0.768159	1.150374e-21	3.986506e-17	4.429451e-18
10	8177169	8165881	NM_013452	VCX	0.768159	1.150374e-21	3.986506e-17	3.986506e-18
11	8177169	7971820	NM_016075	VPS36	-0.755538	1.239219e-20	4.294390e-16	3.903991e-17
12	8176650	7971820	NM_016075	VPS36	-0.755538	1.239219e-20	4.294390e-16	3.578658e-17
13	8176650	8107474	NM_005509	DMXL1	-0.754395	1.525977e-20	5.288122e-16	4.067786e-17
14	8177169	8107474	NM_005509	DMXL1	-0.754395	1.525977e-20	5.288122e-16	3.777230e-17
15	8176650	8091562	NM_020865	DHX36	-0.746602	6.123834e-20	2.122153e-15	1.414769e-16
16	8177169	8091562	NM_020865	DHX36	-0.746602	6.123834e-20	2.122153e-15	1.326346e-16
17	8176650	8099860	NM_002913	RFC1	-0.741975	1.364536e-19	4.728664e-15	2.781567e-16
18	8177169	8099860	NM_002913	RFC1	-0.741975	1.364536e-19	4.728664e-15	2.627036e-16
19	8176650	8155770	NM_015110	SMC5	-0.739891	1.947000e-19	6.747135e-15	3.551124e-16
20	8177169	8155770	NM_015110	SMC5	-0.739891	1.947000e-19	6.747135e-15	3.373568e-16
21	8177169	7988581	NM_014701	SECISBP2L	-0.738605	2.419941e-19	8.386065e-15	3.993364e-16
22	8176650	7988581	NM_014701	SECISBP2L	-0.738605	2.419941e-19	8.386065e-15	3.811848e-16
23	8177169	8036252	NM_015526	CLIP3	0.736585	3.397206e-19	1.177268e-14	5.118556e-16
24	8176650	8036252	NM_015526	CLIP3	0.736585	3.397206e-19	1.177268e-14	4.905283e-16
25	8176650	8080991	NM_194247	HNRNPA3	-0.735767	3.894296e-19	1.349529e-14	5.398117e-16
26	8177169	8080991	NM_194247	HNRNPA3	-0.735767	3.894296e-19	1.349529e-14	5.190497e-16
27	8176650	8046975	NM_032168	WDR75	-0.734792	4.579061e-19	1.586828e-14	5.877139e-16
28	8177169	8046975	NM_032168	WDR75	-0.734792	4.579061e-19	1.586828e-14	5.667242e-16
29	8176650	8114861	NM_020117	LARS	-0.734529	4.783454e-19	1.657658e-14	5.716063e-16
30	8177169	8114861	NM_020117	LARS	-0.734529	4.783454e-19	1.657658e-14	5.525527e-16
31	8176650	7960894	NR_024420	LOC389634	0.734256	5.004644e-19	1.734309e-14	5.594546e-16
32	8177169	7960894	NR_024420	LOC389634	0.734256	5.004644e-19	1.734309e-14	5.419717e-16
33	8176650	8046590	NM_194247	HNRNPA3	-0.733930	5.281712e-19	1.830325e-14	5.546438e-16
34	8177169	8046590	NM_194247	HNRNPA3	-0.733930	5.281712e-19	1.830325e-14	5.383308e-16
35	8176650	8083183	NM_001080415	SR140	-0.733753	5.437761e-19	1.884402e-14	5.384005e-16
36	8177169	8083183	NM_001080415	SR140	-0.733753	5.437761e-19	1.884402e-14	5.234449e-16
37	8177169	8091190	NM_001184	ATR	-0.733254	5.903874e-19	2.045929e-14	5.529537e-16
38	8176650	8091190	NM_001184	ATR	-0.733254	5.903874e-19	2.045929e-14	5.384022e-16
39	8176650	8154394	NM_001039697	SNAPC3	-0.732973	6.183427e-19	2.142805e-14	5.494371e-16
40	8177169	8154394	NM_001039697	SNAPC3	-0.732973	6.183427e-19	2.142805e-14	5.357012e-16
41	8177169	8027416	NM_003796	C19orf2	-0.731430	7.963661e-19	2.759727e-14	6.731042e-16
42	8176650	8027416	NM_003796	C19orf2	-0.731430	7.963661e-19	2.759727e-14	6.570779e-16
43	8177169	7969881	NM_003291	TPP2	-0.729826	1.033883e-18	3.582818e-14	8.332136e-16
44	8176650	7969881	NM_003291	TPP2	-0.729826	1.033883e-18	3.582818e-14	8.142769e-16
45	8176650	7902382	NM_004582	RABGGTB	-0.728902	1.200543e-18	4.160362e-14	9.245248e-16
46	8177169	7902382	NM_004582	RABGGTB	-0.728902	1.200543e-18	4.160362e-14	9.044264e-16
47	8176650	7969935	NM_000123	ERCC5	-0.728244	1.334942e-18	4.626108e-14	9.842784e-16
48	8177169	7969935	NM_000123	ERCC5	-0.728244	1.334942e-18	4.626108e-14	9.637726e-16
49	8177169	8130038	NM_001042683	SHPRH	-0.728137	1.358131e-18	4.706468e-14	9.605037e-16
50	8176650	8130038	NM_001042683	SHPRH	-0.728137	1.358131e-18	4.706468e-14	9.412936e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation