[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1914	8137639	NM_018051	WDR60		WD repeat domain 60

Fetching correlation data, please wait...
Getting list of correlations for id 1914.
Getting list of p-values for id 1914.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8137639	7998174	NM_018032	LUC7L	0.493794	8.664370e-8	1.501275e-3	1.501275e-3
2	8137639	8156529	NM_194320	ZNF169	0.488093	1.280528e-7	2.218770e-3	1.109385e-3
3	8137639	7990632	NM_024776	SGK269	0.417006	9.634472e-6	1.669365e-1	5.564550e-2
4	8137639	7987114	NR_024074	GOLGA8IP	0.411973	1.262664e-5	2.187817e-1	5.469543e-2
5	8137639	7943193	ENST00000459243		0.411080	1.324193e-5	2.294429e-1	4.588858e-2
6	8137639	8100456	ENST00000411373		0.409824	1.415393e-5	2.452452e-1	4.087419e-2
7	8137639	8047038	NM_000534	PMS1	0.402891	2.034892e-5	3.525858e-1	5.036940e-2
8	8137639	7906810	NM_007240	DUSP12	0.402224	2.106293e-5	3.649575e-1	4.561968e-2
9	8137639	7981752	NR_027407	GOLGA8DP	0.400251	2.331648e-5	4.040047e-1	4.488941e-2
10	8137639	7904883	NM_004284	CHD1L	0.397512	2.682001e-5	4.647104e-1	4.647104e-2
11	8137639	8031807	NM_138347	ZNF551	0.390419	3.832420e-5	6.640433e-1	6.036758e-2
12	8137639	8002322	NR_003610	PDXDC2P	0.388434	4.228824e-5	7.327283e-1	6.106069e-2
13	8137639	8173437	NM_001025265	CXorf65	0.386101	4.743744e-5	8.219485e-1	6.322681e-2
14	8137639	8127841	NM_015599	PGM3	0.380347	6.274509e-5	1.087184e+0	7.765601e-2
15	8137639	8105144	AK001108		0.380074	6.357611e-5	1.101583e+0	7.343889e-2
16	8137639	8116128	NR_026921	LOC202181	0.379988	6.383844e-5	1.106129e+0	6.913305e-2
17	8137639	7924450	NM_007207	DUSP10	0.372214	9.234955e-5	1.600141e+0	9.412593e-2
18	8137639	8023133	NM_004671	PIAS2	0.371901	9.371776e-5	1.623848e+0	9.021375e-2
19	8137639	7936777	NM_017615	NSMCE4A	0.371054	9.750363e-5	1.689445e+0	8.891818e-2
20	8137639	8157727	NM_005294	GPR21	0.367743	1.137238e-4	1.970492e+0	9.852460e-2
21	8137639	7985450	NR_003246	GOLGA6L5	0.366590	1.199346e-4	2.078107e+0	9.895748e-2
22	8137639	7985409	NR_003246	GOLGA6L5	0.366590	1.199346e-4	2.078107e+0	9.445942e-2
23	8137639	8173217	NM_015185	ARHGEF9	0.365629	1.253494e-4	2.171929e+0	9.443169e-2
24	8137639	7987248	NR_027410	GOLGA8B	0.364896	1.296372e-4	2.246224e+0	9.359265e-2
25	8137639	7936590	NM_004248	PRLHR	-0.363482	1.382836e-4	2.396040e+0	9.584162e-2
26	8137639	7987279	NR_027410	GOLGA8B	0.360760	1.564689e-4	2.711137e+0	1.042745e-1
27	8137639	8007904	NM_004287	GOSR2	0.360180	1.606166e-4	2.783003e+0	1.030742e-1
28	8137639	8107942	NM_005732	RAD50	0.359599	1.648750e-4	2.856789e+0	1.020282e-1
29	8137639	8046848	NM_018471	ZC3H15	0.359575	1.650515e-4	2.859847e+0	9.861542e-2
30	8137639	8048926	NM_138402	SP140L	0.358462	1.735101e-4	3.006409e+0	1.002136e-1
31	8137639	8166230	NM_018360	TXLNG	0.356995	1.852822e-4	3.210384e+0	1.035608e-1
32	8137639	8066303	NM_032221	CHD6	0.355255	2.001932e-4	3.468747e+0	1.083983e-1
33	8137639	7991695	NR_027407	GOLGA8DP	0.354221	2.095693e-4	3.631208e+0	1.100366e-1
34	8137639	7986642	NR_027407	GOLGA8DP	0.354141	2.103152e-4	3.644131e+0	1.071803e-1
35	8137639	7932834	NM_018109	MTPAP	0.354058	2.110849e-4	3.657469e+0	1.044991e-1
36	8137639	8129214	AK299076	MCM9	0.352637	2.247327e-4	3.893944e+0	1.081651e-1
37	8137639	7992996	AY358225		0.352623	2.248716e-4	3.896350e+0	1.053068e-1
38	8137639	7958582	NM_032300	TCHP	0.352239	2.287004e-4	3.962693e+0	1.042814e-1
39	8137639	7925823	NM_012341	GTPBP4	0.351407	2.372019e-4	4.109997e+0	1.053845e-1
40	8137639	7938128	NM_144666	DNHD1	0.351355	2.377458e-4	4.119421e+0	1.029855e-1
41	8137639	8131479	NM_019005	MIOS	0.350887	2.426573e-4	4.204524e+0	1.025494e-1
42	8137639	8012581	NM_004853	STX8	0.349753	2.549703e-4	4.417870e+0	1.051874e-1
43	8137639	7982131	NM_001012420	GOLGA8G	0.348483	2.694466e-4	4.668702e+0	1.085745e-1
44	8137639	7986922	NM_001012420	GOLGA8G	0.348483	2.694466e-4	4.668702e+0	1.061069e-1
45	8137639	8091354	NM_003071	HLTF	0.347930	2.759860e-4	4.782010e+0	1.062669e-1
46	8137639	8003633	ENST00000391429		-0.347520	2.809204e-4	4.867508e+0	1.058154e-1
47	8137639	7950336	NM_015531	C2CD3	0.346378	2.951066e-4	5.113311e+0	1.087939e-1
48	8137639	7969114	NM_031915	SETDB2	0.345863	3.017288e-4	5.228054e+0	1.089178e-1
49	8137639	7981874	NM_001012423	GOLGA8E	0.344405	3.211990e-4	5.565415e+0	1.135799e-1
50	8137639	8083075	NM_152282	ACPL2	0.343902	3.281849e-4	5.686461e+0	1.137292e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation