[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6375	8073943	NM_014838	ZBED4		zinc finger, BED-type containing 4

Fetching correlation data, please wait...
Getting list of correlations for id 6375.
Getting list of p-values for id 6375.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.102 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8073943	7901601	NM_016491	MRPL37	0.554213	8.605433e-10	1.491063e-5	1.491063e-5
2	8073943	8015655	NM_178126	FAM134C	0.547761	1.472035e-9	2.550595e-5	1.275297e-5
3	8073943	8063697	NM_198976	TH1L	0.501285	5.129274e-8	8.887494e-4	2.962498e-4
4	8073943	8071691	NM_004327	BCR	0.479525	2.273235e-7	3.938834e-3	9.847085e-4
5	8073943	7982187	NM_005503	APBA2	0.474905	3.077847e-7	5.332985e-3	1.066597e-3
6	8073943	7986049	NM_022769	CRTC3	0.470482	4.096674e-7	7.098308e-3	1.183051e-3
7	8073943	8082408	NM_013336	SEC61A1	0.461852	7.076177e-7	1.226089e-2	1.751556e-3
8	8073943	7994362	NM_138414	CCDC101	0.460612	7.645251e-7	1.324693e-2	1.655866e-3
9	8073943	8032576	NM_198969	AES	0.460478	7.709141e-7	1.335763e-2	1.484181e-3
10	8073943	8073068	NM_014508	APOBEC3C	0.455169	1.069560e-6	1.853227e-2	1.853227e-3
11	8073943	7940372	NM_024092	TMEM109	0.451004	1.377519e-6	2.386828e-2	2.169843e-3
12	8073943	7996744	NM_173163	NFATC3	0.450930	1.383702e-6	2.397540e-2	1.997950e-3
13	8073943	8014723	NM_003559	PIP4K2B	0.450721	1.401269e-6	2.427979e-2	1.867676e-3
14	8073943	8119627	NM_006245	PPP2R5D	0.448131	1.637036e-6	2.836492e-2	2.026066e-3
15	8073943	8024019	NM_002819	PTBP1	0.446773	1.775257e-6	3.075987e-2	2.050658e-3
16	8073943	7956166	NM_015292	ESYT1	0.442496	2.286318e-6	3.961503e-2	2.475939e-3
17	8073943	7997099	NM_012426	SF3B3	0.441223	2.463425e-6	4.268376e-2	2.510809e-3
18	8073943	7966202	NM_031954	KCTD10	0.441092	2.482453e-6	4.301347e-2	2.389637e-3
19	8073943	8034589	NM_004461	FARSA	0.440989	2.497326e-6	4.327117e-2	2.277430e-3
20	8073943	8117377	NM_005321	HIST1H1E	0.440626	2.550887e-6	4.419921e-2	2.209961e-3
21	8073943	7946655	NR_002207	CSNK2A1P	0.439077	2.791829e-6	4.837402e-2	2.303525e-3
22	8073943	7921625	NM_052931	SLAMF6	0.436220	3.293560e-6	5.706751e-2	2.593978e-3
23	8073943	8117955	NM_014046	MRPS18B	0.432213	4.142467e-6	7.177653e-2	3.120719e-3
24	8073943	8177824	NM_014046	MRPS18B	0.432213	4.142467e-6	7.177653e-2	2.990689e-3
25	8073943	8179139	NM_014046	MRPS18B	0.432213	4.142467e-6	7.177653e-2	2.871061e-3
26	8073943	7937700	NM_001001480	KRTAP5-5	-0.432183	4.149528e-6	7.189888e-2	2.765342e-3
27	8073943	8124397	NM_005319	HIST1H1C	0.432045	4.182090e-6	7.246307e-2	2.683818e-3
28	8073943	7928308	NM_019058	DDIT4	0.430666	4.522390e-6	7.835945e-2	2.798552e-3
29	8073943	7899023	NM_015627	LDLRAP1	0.428480	5.115468e-6	8.863571e-2	3.056404e-3
30	8073943	7945645	NM_001005922	KRTAP5-1	-0.428198	5.197087e-6	9.004993e-2	3.001664e-3
31	8073943	8158446	NM_015354	NUP188	0.428156	5.209285e-6	9.026129e-2	2.911654e-3
32	8073943	8065762	NM_080476	PIGU	0.428066	5.235772e-6	9.072022e-2	2.835007e-3
33	8073943	8075886	NM_000878	IL2RB	0.425897	5.911094e-6	1.024215e-1	3.103683e-3
34	8073943	8139314	NM_033508	GCK	-0.425432	6.066107e-6	1.051074e-1	3.091395e-3
35	8073943	8167125	NM_004651	USP11	0.424611	6.349245e-6	1.100134e-1	3.143239e-3
36	8073943	8034837	NM_006145	DNAJB1	0.423811	6.637291e-6	1.150043e-1	3.194565e-3
37	8073943	7941136	NM_013265	C11orf2	0.423788	6.645473e-6	1.151461e-1	3.112057e-3
38	8073943	8034744	NM_001145028	PALM3	-0.423105	6.901538e-6	1.195830e-1	3.146920e-3
39	8073943	8072039	NM_032608	MYO18B	-0.422705	7.055618e-6	1.222527e-1	3.134685e-3
40	8073943	8176360	NM_002414	CD99	0.422114	7.289197e-6	1.262999e-1	3.157498e-3
41	8073943	8165794	NM_002414	CD99	0.422114	7.289197e-6	1.262999e-1	3.080486e-3
42	8073943	7942332	NM_016730	FOLR1	-0.421431	7.567967e-6	1.311302e-1	3.122147e-3
43	8073943	7922648	NM_015602	TOR1AIP1	-0.421340	7.606199e-6	1.317926e-1	3.064944e-3
44	8073943	8092230	NM_022470	ZMAT3	0.420601	7.920652e-6	1.372411e-1	3.119117e-3
45	8073943	8177026	NM_178129	P2RY8	0.420541	7.946648e-6	1.376916e-1	3.059813e-3
46	8073943	8171136	NM_178129	P2RY8	0.420541	7.946648e-6	1.376916e-1	2.993295e-3
47	8073943	8033899	NM_003755	EIF3G	0.419760	8.293923e-6	1.437088e-1	3.057634e-3
48	8073943	8119993	NM_007355	HSP90AB1	0.419362	8.476082e-6	1.468651e-1	3.059689e-3
49	8073943	7981317	ENST00000439283		-0.418814	8.733268e-6	1.513213e-1	3.088190e-3
50	8073943	8013327	AK026312	LOC79999	-0.417770	9.243637e-6	1.601645e-1	3.203290e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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