[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15782	8165794	NM_002414	CD99		CD99 molecule
15783	8176360	NM_002414	CD99		CD99 molecule

Fetching correlation data, please wait...
Getting list of correlations for id 15782.
Getting list of p-values for id 15782.
1 of 2 done.
Getting list of correlations for id 15783.
Getting list of p-values for id 15783.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.256 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165794	8176360	NM_002414	CD99	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176360	8165794	NM_002414	CD99	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8165794	7914563	NM_003680	YARS	0.763022	3.081557e-21	1.067883e-16	3.559609e-17
4	8176360	7914563	NM_003680	YARS	0.763022	3.081557e-21	1.067883e-16	2.669707e-17
5	8176360	8050215	NM_006826	YWHAQ	0.759103	6.426804e-21	2.227145e-16	4.454290e-17
6	8165794	8050215	NM_006826	YWHAQ	0.759103	6.426804e-21	2.227145e-16	3.711908e-17
7	8176360	8164883	NM_033161	SURF4	0.755087	1.345563e-20	4.662913e-16	6.661304e-17
8	8165794	8164883	NM_033161	SURF4	0.755087	1.345563e-20	4.662913e-16	5.828641e-17
9	8176360	8022531	NM_000271	NPC1	0.747454	5.273375e-20	1.827436e-15	2.030484e-16
10	8165794	8022531	NM_000271	NPC1	0.747454	5.273375e-20	1.827436e-15	1.827436e-16
11	8176360	7927981	NM_003171	SUPV3L1	0.741968	1.366143e-19	4.734233e-15	4.303848e-16
12	8165794	7927981	NM_003171	SUPV3L1	0.741968	1.366143e-19	4.734233e-15	3.945194e-16
13	8176360	8016099	NM_004247	EFTUD2	0.740823	1.661567e-19	5.757996e-15	4.429227e-16
14	8165794	8016099	NM_004247	EFTUD2	0.740823	1.661567e-19	5.757996e-15	4.112854e-16
15	8176360	7898328	NM_001114600	C1orf144	0.732963	6.194296e-19	2.146571e-14	1.431048e-15
16	8165794	7898328	NM_001114600	C1orf144	0.732963	6.194296e-19	2.146571e-14	1.341607e-15
17	8176360	8177858	NM_178014	TUBB	0.731520	7.847464e-19	2.719460e-14	1.599682e-15
18	8176360	8179174	NM_178014	TUBB	0.731520	7.847464e-19	2.719460e-14	1.510811e-15
19	8165794	8117995	NM_178014	TUBB	0.731520	7.847464e-19	2.719460e-14	1.431295e-15
20	8165794	8179174	NM_178014	TUBB	0.731520	7.847464e-19	2.719460e-14	1.359730e-15
21	8165794	8177858	NM_178014	TUBB	0.731520	7.847464e-19	2.719460e-14	1.294981e-15
22	8176360	8117995	NM_178014	TUBB	0.731520	7.847464e-19	2.719460e-14	1.236118e-15
23	8165794	8106393	NM_001992	F2R	0.727353	1.540655e-18	5.338987e-14	2.321299e-15
24	8176360	8106393	NM_001992	F2R	0.727353	1.540655e-18	5.338987e-14	2.224578e-15
25	8165794	7904287	NM_001767	CD2	0.727073	1.611268e-18	5.583688e-14	2.233475e-15
26	8176360	7904287	NM_001767	CD2	0.727073	1.611268e-18	5.583688e-14	2.147572e-15
27	8165794	7933164	NM_004966	HNRNPF	0.724119	2.578647e-18	8.936044e-14	3.309646e-15
28	8176360	7933164	NM_004966	HNRNPF	0.724119	2.578647e-18	8.936044e-14	3.191444e-15
29	8176360	8073194	NM_004810	GRAP2	0.721509	3.887064e-18	1.347023e-13	4.644907e-15
30	8165794	8073194	NM_004810	GRAP2	0.721509	3.887064e-18	1.347023e-13	4.490077e-15
31	8165794	7903619	NM_006513	SARS	0.720380	4.635066e-18	1.606236e-13	5.181405e-15
32	8176360	7903619	NM_006513	SARS	0.720380	4.635066e-18	1.606236e-13	5.019486e-15
33	8176360	8028172	NM_001749	CAPNS1	0.719857	5.027439e-18	1.742209e-13	5.279420e-15
34	8165794	8028172	NM_001749	CAPNS1	0.719857	5.027439e-18	1.742209e-13	5.124143e-15
35	8165794	8139433	NM_033054	MYO1G	0.715611	9.660475e-18	3.347741e-13	9.564975e-15
36	8176360	8139433	NM_033054	MYO1G	0.715611	9.660475e-18	3.347741e-13	9.299281e-15
37	8176360	8152628	NM_024295	DERL1	0.713472	1.336528e-17	4.631606e-13	1.251785e-14
38	8165794	8152628	NM_024295	DERL1	0.713472	1.336528e-17	4.631606e-13	1.218844e-14
39	8176360	8062349	NM_002951	RPN2	0.712482	1.551452e-17	5.376400e-13	1.378564e-14
40	8165794	8062349	NM_002951	RPN2	0.712482	1.551452e-17	5.376400e-13	1.344100e-14
41	8176360	8060758	NM_000311	PRNP	0.711210	1.877655e-17	6.506825e-13	1.587031e-14
42	8165794	8060758	NM_000311	PRNP	0.711210	1.877655e-17	6.506825e-13	1.549244e-14
43	8176360	8020806	NM_017831	RNF125	0.711103	1.907854e-17	6.611479e-13	1.537553e-14
44	8165794	8020806	NM_017831	RNF125	0.711103	1.907854e-17	6.611479e-13	1.502609e-14
45	8165794	8075182	NM_005080	XBP1	0.709769	2.327739e-17	8.066547e-13	1.792566e-14
46	8176360	8075182	NM_005080	XBP1	0.709769	2.327739e-17	8.066547e-13	1.753597e-14
47	8165794	8138773	NM_022170	EIF4H	0.707252	3.377721e-17	1.170516e-12	2.490459e-14
48	8176360	8138773	NM_022170	EIF4H	0.707252	3.377721e-17	1.170516e-12	2.438574e-14
49	8176360	7951752	NM_020886	USP28	0.707190	3.408515e-17	1.181187e-12	2.410586e-14
50	8165794	7951752	NM_020886	USP28	0.707190	3.408515e-17	1.181187e-12	2.362374e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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