[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1651	7926916	NR_024285	ZEB1		zinc finger E-box binding homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 1651.
Getting list of p-values for id 1651.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7926916	7903541	NM_007269	STXBP3	0.756830	9.781212e-21	1.694791e-16	1.694791e-16
2	7926916	7927814	NM_012238	SIRT1	0.753767	1.710207e-20	2.963276e-16	1.481638e-16
3	7926916	7987361	NM_014106	ZNF770	0.753289	1.864630e-20	3.230844e-16	1.076948e-16
4	7926916	7971039	NM_001014286	FAM48A	0.750418	3.120953e-20	5.407675e-16	1.351919e-16
5	7926916	8084694	NM_001967	EIF4A2	0.741589	1.457758e-19	2.525857e-15	5.051715e-16
6	7926916	8084173	NM_014616	ATP11B	0.739158	2.204201e-19	3.819218e-15	6.365364e-16
7	7926916	8085852	NM_018297	NGLY1	0.737868	2.739844e-19	4.747328e-15	6.781897e-16
8	7926916	8084146	NM_001013439	FXR1	0.737745	2.796946e-19	4.846268e-15	6.057835e-16
9	7926916	7951008	NM_024116	TAF1D	0.735548	4.039040e-19	6.998444e-15	7.776049e-16
10	7926916	7972062	NM_012158	FBXL3	0.735401	4.138811e-19	7.171318e-15	7.171318e-16
11	7926916	7972723	NM_018011	ARGLU1	0.735176	4.296374e-19	7.444327e-15	6.767570e-16
12	7926916	8084016	NM_006218	PIK3CA	0.734748	4.612495e-19	7.992071e-15	6.660059e-16
13	7926916	7934812	NM_015045	WAPAL	0.732362	6.836443e-19	1.184551e-14	9.111927e-16
14	7926916	8120758	NM_015571	SENP6	0.731844	7.441983e-19	1.289472e-14	9.210517e-16
15	7926916	8066009	NM_184234	RBM39	0.731197	8.271517e-19	1.433206e-14	9.554706e-16
16	7926916	7932938	NM_025209	EPC1	0.730267	9.624834e-19	1.667695e-14	1.042309e-15
17	7926916	7988970	NM_019600	KIAA1370	0.730190	9.745592e-19	1.688619e-14	9.933051e-16
18	7926916	8120992	NM_015021	ZNF292	0.730138	9.827780e-19	1.702859e-14	9.460330e-16
19	7926916	8169750	NM_001042750	STAG2	0.729506	1.088838e-18	1.886629e-14	9.929627e-16
20	7926916	8047401	AK125394		0.728234	1.337250e-18	2.317053e-14	1.158527e-15
21	7926916	8070341	NM_033656	BRWD1	0.728137	1.358255e-18	2.353448e-14	1.120690e-15
22	7926916	7957186	NM_022771	TBC1D15	0.727958	1.397795e-18	2.421960e-14	1.100891e-15
23	7926916	8067017	NM_003859	DPM1	0.727695	1.458270e-18	2.526744e-14	1.098584e-15
24	7926916	8173673	NM_000489	ATRX	0.727003	1.629538e-18	2.823501e-14	1.176459e-15
25	7926916	7922912	NM_003292	TPR	0.726821	1.677611e-18	2.906796e-14	1.162718e-15
26	7926916	8150714	NM_052937	PCMTD1	0.726632	1.729059e-18	2.995940e-14	1.152285e-15
27	7926916	8128013	NM_020320	RARS2	0.726499	1.766301e-18	3.060470e-14	1.133507e-15
28	7926916	7930470	NM_007373	SHOC2	0.725952	1.927307e-18	3.339444e-14	1.192659e-15
29	7926916	7978449	NM_015382	HECTD1	0.724418	2.459165e-18	4.260996e-14	1.469309e-15
30	7926916	7951447	NM_152434	CWF19L2	0.723756	2.730887e-18	4.731807e-14	1.577269e-15
31	7926916	8041913	NR_024188	KLRAQ1	0.723688	2.760391e-18	4.782930e-14	1.542881e-15
32	7926916	8068062	NM_006447	USP16	0.723626	2.787399e-18	4.829726e-14	1.509289e-15
33	7926916	8135235	NM_004279	PMPCB	0.723584	2.805947e-18	4.861864e-14	1.473292e-15
34	7926916	8058127	NR_027856	CLK1	0.723350	2.911381e-18	5.044550e-14	1.483691e-15
35	7926916	7924190	NM_144567	ANGEL2	0.723313	2.928513e-18	5.074235e-14	1.449781e-15
36	7926916	7916570	NM_145243	OMA1	0.723292	2.938236e-18	5.091081e-14	1.414189e-15
37	7926916	7975713	NM_015962	FCF1	0.723112	3.022634e-18	5.237318e-14	1.415491e-15
38	7926916	7971967	NM_014953	DIS3	0.722277	3.446380e-18	5.971543e-14	1.571459e-15
39	7926916	8054997	NM_006609	MAP3K2	0.721925	3.642169e-18	6.310787e-14	1.618150e-15
40	7926916	7989037	NM_004748	CCPG1	0.721814	3.705882e-18	6.421181e-14	1.605295e-15
41	7926916	8168472	NM_000052	ATP7A	0.721730	3.754773e-18	6.505894e-14	1.586804e-15
42	7926916	7958216	NM_015275	KIAA1033	0.719978	4.934041e-18	8.549213e-14	2.035527e-15
43	7926916	8063283	NM_001316	CSE1L	0.719135	5.622746e-18	9.742531e-14	2.265705e-15
44	7926916	8105463	NM_022913	GPBP1	0.719111	5.644103e-18	9.779537e-14	2.222622e-15
45	7926916	7936419	NM_018017	C10orf118	0.718951	5.784939e-18	1.002356e-13	2.227459e-15
46	7926916	8116227	NM_020666	CLK4	0.718285	6.411602e-18	1.110938e-13	2.415083e-15
47	7926916	7967304	NM_198261	RSRC2	0.718071	6.626457e-18	1.148166e-13	2.442907e-15
48	7926916	8045455	NM_014607	UBXN4	0.717676	7.041966e-18	1.220161e-13	2.542003e-15
49	7926916	8095163	NM_001024924	EXOC1	0.717236	7.534410e-18	1.305487e-13	2.664260e-15
50	7926916	8166140	NM_152581	MOSPD2	0.716810	8.043088e-18	1.393626e-13	2.787252e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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