[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4258	8148941	NM_003416	ZNF7		zinc finger protein 7

Fetching correlation data, please wait...
Getting list of correlations for id 4258.
Getting list of p-values for id 4258.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.081 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8148941	8125775	AY568085	C6orf125	0.437986	2.974244e-6	5.153472e-2	5.153472e-2
2	8148941	8074734	AK128837	LOC284861	0.414145	1.124199e-5	1.947900e-1	9.739502e-2
3	8148941	8003840	NM_001014764	TMEM93	0.408706	1.501558e-5	2.601749e-1	8.672497e-2
4	8148941	8039491	NM_014501	UBE2S	0.407010	1.641731e-5	2.844628e-1	7.111570e-2
5	8148941	8033465	NM_006351	TIMM44	0.400059	2.354711e-5	4.080007e-1	8.160014e-2
6	8148941	8116740	NM_001003699	RREB1	-0.399539	2.418288e-5	4.190167e-1	6.983612e-2
7	8148941	7971915	AK127969	FLJ25694	0.395810	2.924021e-5	5.066452e-1	7.237788e-2
8	8148941	8002270	ENST00000384355		0.394030	3.198967e-5	5.542851e-1	6.928563e-2
9	8148941	8165622	NM_138462	ZMYND19	0.393108	3.350587e-5	5.805562e-1	6.450625e-2
10	8148941	7908841	NM_032105	PPP1R12B	-0.391985	3.544496e-5	6.141549e-1	6.141549e-2
11	8148941	8026292	ENST00000430596		0.390071	3.899292e-5	6.756304e-1	6.142094e-2
12	8148941	8135568	NM_199072	MDFIC	0.388708	4.171929e-5	7.228702e-1	6.023918e-2
13	8148941	8012891	ENST00000412454		0.386318	4.693538e-5	8.132494e-1	6.255765e-2
14	8148941	7980990	NM_032490	C14orf142	0.385559	4.871458e-5	8.440775e-1	6.029125e-2
15	8148941	8165630	NM_032937	C9orf37	0.384982	5.011041e-5	8.682630e-1	5.788420e-2
16	8148941	8118622	NM_014234	HSD17B8	0.384679	5.085727e-5	8.812039e-1	5.507524e-2
17	8148941	8178234	NM_014234	HSD17B8	0.384679	5.085727e-5	8.812039e-1	5.183552e-2
18	8148941	8179534	NM_014234	HSD17B8	0.384679	5.085727e-5	8.812039e-1	4.895577e-2
19	8148941	8032455	NM_018049	PLEKHJ1	0.383836	5.299093e-5	9.181738e-1	4.832494e-2
20	8148941	7949377	NM_001997	FAU	0.381522	5.928834e-5	1.027289e+0	5.136445e-2
21	8148941	8025278	NM_020415	RETN	0.378780	6.764964e-5	1.172165e+0	5.581739e-2
22	8148941	8159541	BC002613	C9orf142	0.377722	7.116109e-5	1.233008e+0	5.604583e-2
23	8148941	8165552	NM_001130969	NELF	0.377565	7.169779e-5	1.242308e+0	5.401337e-2
24	8148941	7945130	ENST00000411383		0.375697	7.836047e-5	1.357752e+0	5.657299e-2
25	8148941	8161857	NM_018339	RFK	0.375165	8.035954e-5	1.392390e+0	5.569559e-2
26	8148941	8167887	NM_014061	MAGEH1	0.374498	8.293612e-5	1.437034e+0	5.527054e-2
27	8148941	8093943	AK026375	LOC93622	0.373692	8.615156e-5	1.492748e+0	5.528697e-2
28	8148941	7973530	NM_004563	PCK2	0.373433	8.720772e-5	1.511048e+0	5.396601e-2
29	8148941	8124385	NM_003544	HIST1H4B	0.372446	9.135115e-5	1.582841e+0	5.458074e-2
30	8148941	8017378	NM_001915	CYB561	0.372052	9.305584e-5	1.612379e+0	5.374595e-2
31	8148941	8059989	NM_018645	HES6	0.370541	9.986636e-5	1.730385e+0	5.581885e-2
32	8148941	8076344	NM_001018050	POLR3H	0.367413	1.154710e-4	2.000766e+0	6.252394e-2
33	8148941	8023175	NM_016097	IER3IP1	0.367014	1.176125e-4	2.037872e+0	6.175370e-2
34	8148941	7927285	NM_005614	RHEB	0.365840	1.241449e-4	2.151059e+0	6.326644e-2
35	8148941	8087634	NM_007275	TUSC2	0.365429	1.265062e-4	2.191973e+0	6.262780e-2
36	8148941	8110858	AK295082	PDCD6	0.365069	1.286114e-4	2.228450e+0	6.190138e-2
37	8148941	8168359	NM_001013627	NHSL2	-0.363094	1.407494e-4	2.438765e+0	6.591258e-2
38	8148941	8157828	NM_030978	ARPC5L	0.361338	1.524332e-4	2.641210e+0	6.950554e-2
39	8148941	8116168	NM_017838	NHP2	0.360634	1.573604e-4	2.726584e+0	6.991240e-2
40	8148941	8112070	ENST00000364499		-0.359095	1.686522e-4	2.922236e+0	7.305590e-2
41	8148941	8068938	NM_003683	RRP1	0.358197	1.755897e-4	3.042443e+0	7.420594e-2
42	8148941	7910901	NR_027247	LOC100130331	-0.358096	1.763849e-4	3.056221e+0	7.276716e-2
43	8148941	8028397	NM_174905	FAM98C	0.356884	1.861955e-4	3.226209e+0	7.502813e-2
44	8148941	8113003	AK002104	FLJ11292	0.356781	1.870592e-4	3.241175e+0	7.366307e-2
45	8148941	7952179	NM_002105	H2AFX	0.355786	1.955280e-4	3.387914e+0	7.528697e-2
46	8148941	8108013	ENST00000365547		0.355410	1.988185e-4	3.444928e+0	7.488973e-2
47	8148941	7978831	NM_152329	PPIL5	0.354658	2.055587e-4	3.561715e+0	7.578117e-2
48	8148941	8012958	NM_014501	UBE2S	0.354351	2.083742e-4	3.610499e+0	7.521874e-2
49	8148941	8075263	NM_003634	NIPSNAP1	0.353908	2.124960e-4	3.681919e+0	7.514120e-2
50	8148941	8137008	AK290098	C7orf11	-0.353674	2.146999e-4	3.720105e+0	7.440211e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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