Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16340	8007867	NM_001006607	LRRC37A2		leucine rich repeat containing 37, member A2

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8007867	8007850	NM_014834	LRRC37A		0.999750	7.300033e-172	1.264877e-167	1.264877e-167
2	8007867	8017688	NM_199340	LRRC37A3		0.988251	7.509186e-86	1.301117e-81	6.505584e-82
3	8007867	8007919	NR_002940	LRRC37A4		0.961557	1.253334e-59	2.171652e-55	7.238838e-56
4	8007867	8016245	NR_002940	LRRC37A4		0.958313	7.493539e-58	1.298406e-53	3.246014e-54
5	8007867	8017840	ENST00000443126			0.930155	1.276751e-46	2.212226e-42	4.424452e-43
6	8007867	8006170	NR_015341	LRRC37BP1		0.772879	4.547922e-22	7.880185e-18	1.313364e-18
7	8007867	8168316	NM_181672	OGT		0.769600	8.686541e-22	1.505117e-17	2.150167e-18
8	8007867	8052845	NM_022173	TIA1		0.767469	1.315136e-21	2.278736e-17	2.848420e-18
9	8007867	8139896	NR_022007	PMS2L4		0.762969	3.112301e-21	5.392684e-17	5.991871e-18
10	8007867	8105714	NM_139168	SFRS12		0.762088	3.675943e-21	6.369307e-17	6.369307e-18
11	8007867	8133309	NR_027775	PMS2L5		0.757405	8.799410e-21	1.524674e-16	1.386067e-17
12	8007867	8140258	NR_027775	PMS2L5		0.756848	9.749533e-21	1.689302e-16	1.407751e-17
13	8007867	8021496	NM_020854	KIAA1468		0.754527	1.489791e-20	2.581361e-16	1.985662e-17
14	8007867	8133531	NR_027775	PMS2L5		0.754389	1.527780e-20	2.647184e-16	1.890846e-17
15	8007867	8140239	NR_003613	PMS2L1		0.753622	1.755651e-20	3.042017e-16	2.028011e-17
16	8007867	7939434	NM_018259	TTC17		0.752928	1.989915e-20	3.447925e-16	2.154953e-17
17	8007867	8129193	NM_001042475	C6orf204		0.749175	3.892673e-20	6.744834e-16	3.967550e-17
18	8007867	8140269	NR_027775	PMS2L5		0.749083	3.956183e-20	6.854879e-16	3.808266e-17
19	8007867	7903239	NM_000028	AGL		0.744829	8.341464e-20	1.445325e-15	7.606976e-17
20	8007867	8140280	NR_003614	PMS2L2		0.743530	1.044481e-19	1.809772e-15	9.048861e-17
21	8007867	7972190	NM_022118	RBM26		0.743070	1.130707e-19	1.959176e-15	9.329408e-17
22	8007867	8051670	NM_005633	SOS1		0.742335	1.282931e-19	2.222934e-15	1.010425e-16
23	8007867	8051820	NM_022065	THADA		0.741859	1.392079e-19	2.412056e-15	1.048720e-16
24	8007867	8116664	NM_003913	PRPF4B		0.741563	1.464375e-19	2.537323e-15	1.057218e-16
25	8007867	8151074	NM_002603	PDE7A		0.740148	1.863679e-19	3.229197e-15	1.291679e-16
26	8007867	8100251	NM_015030	FRYL		0.739810	1.973927e-19	3.420224e-15	1.315471e-16
27	8007867	8134180	NM_019004	ANKIB1		0.739531	2.069558e-19	3.585923e-15	1.328120e-16
28	8007867	8166500	NM_003410	ZFX		0.738948	2.283774e-19	3.957095e-15	1.413248e-16
29	8007867	8113010	NM_001239	CCNH		0.738667	2.394733e-19	4.149354e-15	1.430812e-16
30	8007867	7982957	NM_001080541	MGA		0.738342	2.529625e-19	4.383081e-15	1.461027e-16
31	8007867	7988713	NM_017672	TRPM7		0.737186	3.072432e-19	5.323602e-15	1.717291e-16
32	8007867	8078110	NM_014296	CAPN7		0.737148	3.092042e-19	5.357581e-15	1.674244e-16
33	8007867	8107234	NM_002372	MAN2A1		0.736920	3.212189e-19	5.565760e-15	1.686594e-16
34	8007867	8076077	NM_006386	DDX17		0.736639	3.366715e-19	5.833507e-15	1.715737e-16
35	8007867	8052526	NM_003400	XPO1		0.735735	3.914980e-19	6.783487e-15	1.938139e-16
36	8007867	7916443	NM_015306	USP24		0.735323	4.192693e-19	7.264680e-15	2.017967e-16
37	8007867	8133754	NR_023383	PMS2L11		0.735067	4.375286e-19	7.581059e-15	2.048935e-16
38	8007867	7972069	NM_015057	MYCBP2		0.734883	4.511072e-19	7.816334e-15	2.056930e-16
39	8007867	8070341	NM_033656	BRWD1		0.734607	4.722138e-19	8.182049e-15	2.097961e-16
40	8007867	8027439	NM_001136156	ZNF507		0.734294	4.972670e-19	8.616146e-15	2.154036e-16
41	8007867	7969881	NM_003291	TPP2		0.733883	5.322682e-19	9.222611e-15	2.249417e-16
42	8007867	8116227	NM_020666	CLK4		0.733203	5.954275e-19	1.031697e-14	2.456422e-16
43	8007867	8144812	NM_006197	PCM1		0.733197	5.959776e-19	1.032650e-14	2.401513e-16
44	8007867	8086077	NM_015097	CLASP2		0.733037	6.119254e-19	1.060283e-14	2.409735e-16
45	8007867	8160011	NM_001017969	KIAA2026		0.732850	6.309682e-19	1.093279e-14	2.429508e-16
46	8007867	8072407	NR_002323	TUG1		0.731761	7.543308e-19	1.307029e-14	2.841367e-16
47	8007867	7929201	NM_003972	BTAF1		0.731758	7.547528e-19	1.307760e-14	2.782468e-16
48	8007867	8177560	NM_018429	BDP1		0.730764	8.877414e-19	1.538189e-14	3.204561e-16
49	8007867	8157534	NM_007018	CEP110		0.729858	1.028470e-18	1.782029e-14	3.636794e-16
50	8007867	8113157	NM_014639	TTC37		0.729631	1.066990e-18	1.848774e-14	3.697548e-16

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.