[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16296	8007850	NM_014834	LRRC37A		leucine rich repeat containing 37A

Fetching correlation data, please wait...
Getting list of correlations for id 16296.
Getting list of p-values for id 16296.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.151 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8007850	8007867	NM_001006607	LRRC37A2	0.999750	7.300033e-172	1.264877e-167	1.264877e-167
2	8007850	8017688	NM_199340	LRRC37A3	0.987640	1.009208e-84	1.748654e-80	8.743271e-81
3	8007850	8007919	NR_002940	LRRC37A4	0.962473	3.705059e-60	6.419756e-56	2.139919e-56
4	8007850	8016245	NR_002940	LRRC37A4	0.959311	2.206856e-58	3.823820e-54	9.559550e-55
5	8007850	8017840	ENST00000443126		0.931332	5.484485e-47	9.502967e-43	1.900593e-43
6	8007850	8006170	NR_015341	LRRC37BP1	0.769870	8.238899e-22	1.427554e-17	2.379257e-18
7	8007850	8168316	NM_181672	OGT	0.765606	1.882879e-21	3.262464e-17	4.660662e-18
8	8007850	8052845	NM_022173	TIA1	0.763198	2.980585e-21	5.164460e-17	6.455574e-18
9	8007850	8139896	NR_022007	PMS2L4	0.760541	4.915260e-21	8.516672e-17	9.462969e-18
10	8007850	8105714	NM_139168	SFRS12	0.759042	6.499444e-21	1.126159e-16	1.126159e-17
11	8007850	8133309	NR_027775	PMS2L5	0.756649	1.011105e-20	1.751942e-16	1.592674e-17
12	8007850	8140258	NR_027775	PMS2L5	0.755367	1.278468e-20	2.215202e-16	1.846002e-17
13	8007850	8133531	NR_027775	PMS2L5	0.752781	2.043566e-20	3.540887e-16	2.723759e-17
14	8007850	8140239	NR_003613	PMS2L1	0.751687	2.487615e-20	4.310290e-16	3.078778e-17
15	8007850	7939434	NM_018259	TTC17	0.750601	3.020909e-20	5.234330e-16	3.489553e-17
16	8007850	8021496	NM_020854	KIAA1468	0.750372	3.146658e-20	5.452215e-16	3.407634e-17
17	8007850	8140269	NR_027775	PMS2L5	0.747524	5.209018e-20	9.025666e-16	5.309215e-17
18	8007850	8129193	NM_001042475	C6orf204	0.747029	5.682081e-20	9.845342e-16	5.469635e-17
19	8007850	8140280	NR_003614	PMS2L2	0.741719	1.425837e-19	2.470547e-15	1.300288e-16
20	8007850	7903239	NM_000028	AGL	0.741409	1.503409e-19	2.604956e-15	1.302478e-16
21	8007850	8051820	NM_022065	THADA	0.739556	2.060704e-19	3.570581e-15	1.700277e-16
22	8007850	7972190	NM_022118	RBM26	0.739544	2.064686e-19	3.577481e-15	1.626128e-16
23	8007850	7982957	NM_001080541	MGA	0.738682	2.388750e-19	4.138987e-15	1.799560e-16
24	8007850	8134180	NM_019004	ANKIB1	0.738641	2.405290e-19	4.167646e-15	1.736519e-16
25	8007850	8116664	NM_003913	PRPF4B	0.738307	2.544712e-19	4.409223e-15	1.763689e-16
26	8007850	8100251	NM_015030	FRYL	0.737636	2.848670e-19	4.935890e-15	1.898419e-16
27	8007850	8051670	NM_005633	SOS1	0.737508	2.910646e-19	5.043276e-15	1.867880e-16
28	8007850	8151074	NM_002603	PDE7A	0.737242	3.043467e-19	5.273415e-15	1.883362e-16
29	8007850	8166500	NM_003410	ZFX	0.736024	3.730836e-19	6.464419e-15	2.229110e-16
30	8007850	8076077	NM_006386	DDX17	0.735226	4.260852e-19	7.382779e-15	2.460926e-16
31	8007850	8113010	NM_001239	CCNH	0.734775	4.592169e-19	7.956851e-15	2.566726e-16
32	8007850	8078110	NM_014296	CAPN7	0.733373	5.789814e-19	1.003201e-14	3.135003e-16
33	8007850	7988713	NM_017672	TRPM7	0.733370	5.792186e-19	1.003612e-14	3.041248e-16
34	8007850	8133754	NR_023383	PMS2L11	0.733227	5.930597e-19	1.027595e-14	3.022337e-16
35	8007850	7972069	NM_015057	MYCBP2	0.733170	5.986973e-19	1.037363e-14	2.963894e-16
36	8007850	8107234	NM_002372	MAN2A1	0.733031	6.124726e-19	1.061231e-14	2.947865e-16
37	8007850	7916443	NM_015306	USP24	0.732594	6.580920e-19	1.140276e-14	3.081827e-16
38	8007850	8052526	NM_003400	XPO1	0.732445	6.744348e-19	1.168593e-14	3.075245e-16
39	8007850	8027439	NM_001136156	ZNF507	0.732138	7.092363e-19	1.228894e-14	3.151010e-16
40	8007850	7969881	NM_003291	TPP2	0.730934	8.633998e-19	1.496013e-14	3.740032e-16
41	8007850	8070341	NM_033656	BRWD1	0.730544	9.201035e-19	1.594263e-14	3.888447e-16
42	8007850	8116227	NM_020666	CLK4	0.729982	1.007979e-18	1.746525e-14	4.158392e-16
43	8007850	8144812	NM_006197	PCM1	0.729962	1.011272e-18	1.752232e-14	4.074958e-16
44	8007850	8086077	NM_015097	CLASP2	0.729560	1.079440e-18	1.870346e-14	4.250785e-16
45	8007850	8157534	NM_007018	CEP110	0.729038	1.174511e-18	2.035075e-14	4.522389e-16
46	8007850	7929201	NM_003972	BTAF1	0.728878	1.205176e-18	2.088208e-14	4.539583e-16
47	8007850	8160011	NM_001017969	KIAA2026	0.728705	1.239349e-18	2.147420e-14	4.568978e-16
48	8007850	8177560	NM_018429	BDP1	0.728694	1.241563e-18	2.151256e-14	4.481784e-16
49	8007850	8072407	NR_002323	TUG1	0.728529	1.275015e-18	2.209218e-14	4.508608e-16
50	8007850	8154316	NM_152896	UHRF2	0.727270	1.561081e-18	2.704886e-14	5.409771e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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