[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 1673.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1673	8067842	ENST00000452841

Fetching correlation data, please wait...
Getting list of correlations for id 1673.
Getting list of p-values for id 1673.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8067842	7970390	ENST00000452841		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8067842	8177323	NM_004676	PRY	0.568323	2.553945e-10	4.425220e-6	2.212610e-6
3	8067842	7980306	ENST00000238638		0.563742	3.812444e-10	6.605821e-6	2.201940e-6
4	8067842	7940002	NM_001005210	LRRC55	0.547951	1.449198e-9	2.511026e-5	6.277565e-6
5	8067842	8087935	NM_022908	NT5DC2	0.545677	1.746414e-9	3.026012e-5	6.052023e-6
6	8067842	7897974	NM_001080830	PRAMEF12	0.542405	2.278872e-9	3.948601e-5	6.581002e-6
7	8067842	7923635	NM_014935	PLEKHA6	0.541092	2.533772e-9	4.390266e-5	6.271809e-6
8	8067842	7931519	NM_152643	KNDC1	0.540047	2.755868e-9	4.775093e-5	5.968866e-6
9	8067842	8101061	ENST00000364774		-0.538523	3.113504e-9	5.394769e-5	5.994188e-6
10	8067842	8069863	NM_175857	KRTAP8-1	0.537331	3.423727e-9	5.932291e-5	5.932291e-6
11	8067842	7959312	NM_001080825	TMEM120B	0.531685	5.343501e-9	9.258684e-5	8.416985e-6
12	8067842	8107353	BC104811	ZRSR1	-0.530824	5.714325e-9	9.901210e-5	8.251009e-6
13	8067842	8044741			0.530018	6.084537e-9	1.054268e-4	8.109751e-6
14	8067842	7920220	NM_052891	PGLYRP3	0.525832	8.404206e-9	1.456197e-4	1.040141e-5
15	8067842	7918313	NM_001010985	MYBPHL	0.523421	1.010242e-8	1.750446e-4	1.166964e-5
16	8067842	7947607			0.523324	1.017719e-8	1.763402e-4	1.102126e-5
17	8067842	8057480	NM_002500	NEUROD1	0.521170	1.198107e-8	2.075960e-4	1.221153e-5
18	8067842	7912211	NM_207420	SLC2A7	0.519592	1.349352e-8	2.338022e-4	1.298901e-5
19	8067842	8061746	NM_006892	DNMT3B	0.518988	1.411899e-8	2.446398e-4	1.287578e-5
20	8067842	8075785	NM_024955	FOXRED2	0.518740	1.438426e-8	2.492360e-4	1.246180e-5
21	8067842	8151411	ENST00000411016		-0.515329	1.854486e-8	3.213268e-4	1.530128e-5
22	8067842	8035779	NM_001076675	ZNF626	-0.514881	1.917062e-8	3.321693e-4	1.509860e-5
23	8067842	8159583	NM_007327	GRIN1	0.514779	1.931510e-8	3.346728e-4	1.455099e-5
24	8067842	8069848	NM_181604	KRTAP6-2	0.514316	1.998840e-8	3.463391e-4	1.443079e-5
25	8067842	8007154	NM_021939	FKBP10	0.513249	2.162429e-8	3.746840e-4	1.498736e-5
26	8067842	8046560	NM_006898	HOXD3	0.512017	2.367173e-8	4.101601e-4	1.577539e-5
27	8067842	7937612	NM_002458	MUC5B	0.511425	2.472130e-8	4.283460e-4	1.586467e-5
28	8067842	7910638	ENST00000410639		0.509907	2.761780e-8	4.785336e-4	1.709049e-5
29	8067842	7981708	ENST00000390541		0.509623	2.819412e-8	4.885195e-4	1.684550e-5
30	8067842	8079107	NM_152393	KBTBD5	0.509345	2.876921e-8	4.984841e-4	1.661614e-5
31	8067842	8151613	AF495523	REXO1L1	0.508990	2.952083e-8	5.115075e-4	1.650024e-5
32	8067842	8151621	AF495523	REXO1L1	0.508990	2.952083e-8	5.115075e-4	1.598461e-5
33	8067842	8151605	AF495523	REXO1L1	0.508990	2.952083e-8	5.115075e-4	1.550023e-5
34	8067842	8151617	AF495523	REXO1L1	0.508990	2.952083e-8	5.115075e-4	1.504434e-5
35	8067842	8151625	AF495523	REXO1L1	0.508990	2.952083e-8	5.115075e-4	1.461450e-5
36	8067842	7959080	NM_022491	SUDS3	-0.507796	3.218969e-8	5.577507e-4	1.549308e-5
37	8067842	7930264	NM_004210	NEURL	0.506470	3.542047e-8	6.137305e-4	1.658731e-5
38	8067842	8137252	NM_130759	GIMAP1	-0.506041	3.653225e-8	6.329944e-4	1.665775e-5
39	8067842	7982377	NM_013372	GREM1	0.506030	3.655986e-8	6.334726e-4	1.624289e-5
40	8067842	7962625	NM_001098531	RAPGEF3	0.505926	3.683370e-8	6.382175e-4	1.595544e-5
41	8067842	8032829	NM_001080400	PLIN4	0.504389	4.112632e-8	7.125958e-4	1.738039e-5
42	8067842	8169006	NM_001031834	RAB40AL	0.504331	4.129705e-8	7.155539e-4	1.703700e-5
43	8067842	8062123	NM_006690	MMP24	0.503267	4.455687e-8	7.720369e-4	1.795435e-5
44	8067842	8069910	NM_020706	SFRS15	-0.503017	4.535889e-8	7.859335e-4	1.786212e-5
45	8067842	8049610	NM_198582	KLHL30	0.501529	5.041560e-8	8.735510e-4	1.941225e-5
46	8067842	8138865	NM_001883	CRHR2	0.501437	5.074566e-8	8.792700e-4	1.911457e-5
47	8067842	8077503	NM_033337	CAV3	0.501327	5.114072e-8	8.861152e-4	1.885352e-5
48	8067842	8150197	NM_024025	DUSP26	0.501262	5.137888e-8	8.902418e-4	1.854670e-5
49	8067842	7955317	NM_020039	ACCN2	0.501125	5.187994e-8	8.989237e-4	1.834538e-5
50	8067842	8052721	NM_000945	PPP3R1	-0.497865	6.526825e-8	1.130903e-3	2.261806e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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