[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 5250.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5250	8180105	NM_080680	COL11A2		collagen, type XI, alpha 2

Fetching correlation data, please wait...
Getting list of correlations for id 5250.
Getting list of p-values for id 5250.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8180105	8178897	NM_080680	COL11A2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8180105	8007537	NM_145273	CD300LG	0.652528	4.639836e-14	8.039443e-10	4.019722e-10
3	8180105	8033674	NM_024690	MUC16	0.652413	4.703280e-14	8.149373e-10	2.716458e-10
4	8180105	8054020	BC038583	FAM178B	0.648054	7.850244e-14	1.360212e-9	3.400529e-10
5	8180105	8104281	NM_182632	SLC6A18	0.645264	1.084844e-13	1.879710e-9	3.759420e-10
6	8180105	7945368	NM_001025295	IFITM5	0.642778	1.443329e-13	2.500857e-9	4.168095e-10
7	8180105	8115849			0.641397	1.689414e-13	2.927248e-9	4.181782e-10
8	8180105	8151605	AF495523	REXO1L1	0.638186	2.428808e-13	4.208396e-9	5.260495e-10
9	8180105	8151613	AF495523	REXO1L1	0.638186	2.428808e-13	4.208396e-9	4.675996e-10
10	8180105	8151617	AF495523	REXO1L1	0.638186	2.428808e-13	4.208396e-9	4.208396e-10
11	8180105	8151621	AF495523	REXO1L1	0.638186	2.428808e-13	4.208396e-9	3.825815e-10
12	8180105	8151625	AF495523	REXO1L1	0.638186	2.428808e-13	4.208396e-9	3.506997e-10
13	8180105	8010768			0.637770	2.544976e-13	4.409679e-9	3.392061e-10
14	8180105	7972899	BX647655	DKFZp451A211	0.635246	3.373841e-13	5.845854e-9	4.175610e-10
15	8180105	8037888	NM_015063	SLC8A2	0.635155	3.408304e-13	5.905569e-9	3.937046e-10
16	8180105	7899075	NM_004455	EXTL1	0.634949	3.487319e-13	6.042478e-9	3.776549e-10
17	8180105	8060101	AK092442	PP14571	0.634654	3.603368e-13	6.243556e-9	3.672680e-10
18	8180105	8018264	NM_030630	C17orf28	0.634472	3.676793e-13	6.370779e-9	3.539322e-10
19	8180105	8029446	NM_001127893	CEACAM19	0.633090	4.284099e-13	7.423059e-9	3.906873e-10
20	8180105	8069148	NM_198695	KRTAP10-8	0.631080	5.343332e-13	9.258391e-9	4.629195e-10
21	8180105	8126212			0.630685	5.579526e-13	9.667645e-9	4.603640e-10
22	8180105	8008723	NM_000502	EPX	0.627441	7.939859e-13	1.375739e-8	6.253361e-10
23	8180105	7987701	NM_016642	SPTBN5	0.627326	8.039154e-13	1.392944e-8	6.056279e-10
24	8180105	8062108	NM_006404	PROCR	0.626111	9.163870e-13	1.587824e-8	6.615933e-10
25	8180105	8157804	NM_182487	OLFML2A	0.625991	9.283025e-13	1.608470e-8	6.433879e-10
26	8180105	8018251	NM_178128	FADS6	0.624125	1.133896e-12	1.964701e-8	7.556544e-10
27	8180105	8154132	NR_026663	C9orf70	0.623484	1.214150e-12	2.103757e-8	7.791693e-10
28	8180105	8024306	NM_005883	APC2	0.620532	1.660409e-12	2.876990e-8	1.027497e-9
29	8180105	8045216	NM_207364	GPR148	0.619774	1.798341e-12	3.115985e-8	1.074478e-9
30	8180105	8068496	NM_009586	SIM2	0.619131	1.924083e-12	3.333859e-8	1.111286e-9
31	8180105	8034469	NM_032301	FBXW9	0.618758	2.000909e-12	3.466975e-8	1.118379e-9
32	8180105	8016640	NR_024193	HILS1	0.618594	2.035502e-12	3.526914e-8	1.102161e-9
33	8180105	8159734	NM_000718	CACNA1B	0.618130	2.136780e-12	3.702398e-8	1.121939e-9
34	8180105	8046922	NM_000090	COL3A1	0.617686	2.238267e-12	3.878246e-8	1.140660e-9
35	8180105	7936762	NM_001001976	ATE1	-0.617255	2.341229e-12	4.056647e-8	1.159042e-9
36	8180105	8150214	AK091697		0.616865	2.438352e-12	4.224932e-8	1.173592e-9
37	8180105	8025450	NM_001004699	OR2Z1	0.616066	2.649561e-12	4.590895e-8	1.240782e-9
38	8180105	7963880	NM_001144996	ITGA7	0.615987	2.671379e-12	4.628699e-8	1.218079e-9
39	8180105	7898002	NM_001100631	PRAMEF22	0.613400	3.489958e-12	6.047050e-8	1.550526e-9
40	8180105	8048551	NM_005876	SPEG	0.613387	3.494594e-12	6.055084e-8	1.513771e-9
41	8180105	8049729	NM_198998	AQP12A	0.613222	3.554246e-12	6.158441e-8	1.502059e-9
42	8180105	8008277	NM_000023	SGCA	0.613026	3.626568e-12	6.283754e-8	1.496132e-9
43	8180105	7931062	NM_144587	BTBD16	0.612529	3.816369e-12	6.612622e-8	1.537819e-9
44	8180105	8074212	NM_001037814	GAB4	0.612368	3.879792e-12	6.722515e-8	1.527844e-9
45	8180105	8163013	ENST00000410626		0.611923	4.060939e-12	7.036388e-8	1.563642e-9
46	8180105	7912968	NM_152232	TAS1R2	0.611765	4.127072e-12	7.150977e-8	1.554560e-9
47	8180105	7925504	NM_001004343	MAP1LC3C	0.611113	4.411317e-12	7.643489e-8	1.626274e-9
48	8180105	8038280	NM_000737	CGB	0.610104	4.888672e-12	8.470601e-8	1.764709e-9
49	8180105	7995334			0.609638	5.125513e-12	8.880977e-8	1.812444e-9
50	8180105	8125568	NM_080680	COL11A2	0.608344	5.843002e-12	1.012417e-7	2.024834e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation