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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 7.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
7 hsa-let-7e MI0000066 link to infopage Homo sapiens let-7e stem-loop

Fetching correlation data, please wait...
Getting list of correlations for id 7.
Getting list of p-values for id 7.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.074 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 hsa-let-7e hsa-let-7a link to infopage 0.853881 5.625632e-31 9.747533e-27 9.747533e-27
2 hsa-let-7e hsa-let-7d MI0000065 link to infopage 0.742078 1.340764e-19 2.323143e-15 1.161571e-15
3 hsa-let-7e hsa-let-7f link to infopage 0.703472 5.864838e-17 1.016200e-12 3.387335e-13
4 hsa-let-7e hsa-miR-140-5p link to infopage 0.657762 2.479848e-14 4.296833e-10 1.074208e-10
5 hsa-let-7e hsa-let-7g MI0000433 link to infopage 0.614528 3.106775e-12 5.383109e-8 1.076622e-8
6 hsa-let-7e RNU11 link to infopage -0.598121 1.611931e-11 2.792994e-7 4.654989e-8
7 hsa-let-7e hsa-miR-768-3p link to infopage -0.582243 7.274315e-11 1.260421e-6 1.800601e-7
8 hsa-let-7e hsa-miR-22-5p link to infopage 0.561447 4.649393e-10 8.056003e-6 1.007000e-6
9 hsa-let-7e hsa-miR-221 MI0000298 link to infopage 0.545148 1.823609e-9 3.159767e-5 3.510853e-6
10 hsa-let-7e 8019885 NM_015295 SMCHD1 link to infopage 0.534066 4.433391e-9 7.681736e-5 7.681736e-6
11 hsa-let-7e SNORD44 link to infopage -0.533708 4.560075e-9 7.901241e-5 7.182947e-6
12 hsa-let-7e 7987180 NM_024713 C15orf29 link to infopage 0.533240 4.730617e-9 8.196740e-5 6.830616e-6
13 hsa-let-7e 7954711 NM_018169 C12orf35 link to infopage 0.532485 5.019367e-9 8.697057e-5 6.690044e-6
14 hsa-let-7e 8082827 NM_025180 CEP63 link to infopage 0.529849 6.164940e-9 1.068199e-4 7.629994e-6
15 hsa-let-7e 8156164 NM_017576 KIF27 link to infopage 0.528129 7.043125e-9 1.220362e-4 8.135748e-6
16 hsa-let-7e 8035445 NM_005354 JUND link to infopage -0.523477 1.005951e-8 1.743012e-4 1.089383e-5
17 hsa-let-7e hsa-miR-20b MI0001519 link to infopage 0.523242 1.024075e-8 1.774415e-4 1.043773e-5
18 hsa-let-7e 8144931 NM_001693 ATP6V1B2 link to infopage 0.522226 1.106207e-8 1.916724e-4 1.064847e-5
19 hsa-let-7e hsa-miR-363-5p link to infopage 0.519843 1.324166e-8 2.294382e-4 1.207569e-5
20 hsa-let-7e 8081219 NM_006100 ST3GAL6 link to infopage 0.516509 1.699040e-8 2.943927e-4 1.471963e-5
21 hsa-let-7e hsa-miR-29b-2-5p link to infopage 0.516399 1.712955e-8 2.968036e-4 1.413351e-5
22 hsa-let-7e 7954436 NM_006152 LRMP link to infopage 0.514052 2.038150e-8 3.531502e-4 1.605228e-5
23 hsa-let-7e 7954810 NM_198578 LRRK2 link to infopage 0.511300 2.494755e-8 4.322662e-4 1.879418e-5
24 hsa-let-7e 8160718 NR_023917 PTENP1 link to infopage 0.508620 3.032353e-8 5.254159e-4 2.189233e-5
25 hsa-let-7e 7925257 NM_000081 LYST link to infopage 0.508368 3.088199e-8 5.350922e-4 2.140369e-5
26 hsa-let-7e 8019877 NM_015295 SMCHD1 link to infopage 0.503401 4.413280e-8 7.646890e-4 2.941112e-5
27 hsa-let-7e 8042503 NM_002357 MXD1 link to infopage 0.502725 4.630843e-8 8.023861e-4 2.971800e-5
28 hsa-let-7e 8034512 NR_002751 SNORD41 link to infopage -0.500692 5.349159e-8 9.268488e-4 3.310174e-5
29 hsa-let-7e hsa-miR-301a MI0000745 link to infopage 0.499573 5.788684e-8 1.003005e-3 3.458639e-5
30 hsa-let-7e 7981962 NR_003320 SNORD116-5 link to infopage -0.495922 7.474862e-8 1.295169e-3 4.317231e-5
31 hsa-let-7e 7981958 NR_003320 SNORD116-5 link to infopage -0.495922 7.474862e-8 1.295169e-3 4.177965e-5
32 hsa-let-7e 7995308 hsa-mir-1826 link to infopage -0.495599 7.645246e-8 1.324692e-3 4.139662e-5
33 hsa-let-7e 7906377 NM_002432 MNDA link to infopage 0.495408 7.747283e-8 1.342372e-3 4.067793e-5
34 hsa-let-7e hsa-miR-93 MI0000095 link to infopage 0.494354 8.334790e-8 1.444169e-3 4.247556e-5
35 hsa-let-7e 8142120 NM_005746 NAMPT link to infopage 0.492936 9.193512e-8 1.592960e-3 4.551314e-5
36 hsa-let-7e 8092957 ENST00000384638 link to infopage 0.492820 9.267221e-8 1.605731e-3 4.460365e-5
37 hsa-let-7e 7922773 NM_000433 NCF2 link to infopage 0.492649 9.376757e-8 1.624711e-3 4.391110e-5
38 hsa-let-7e hsa-miR-144-5p link to infopage 0.492083 9.749537e-8 1.689302e-3 4.445532e-5
39 hsa-let-7e 8008870 NM_030938 TMEM49 link to infopage 0.491718 9.996800e-8 1.732146e-3 4.441399e-5
40 hsa-let-7e 8099410 NM_148894 BOD1L link to infopage 0.491343 1.025788e-7 1.777383e-3 4.443457e-5
41 hsa-let-7e 7933084 NM_005746 NAMPT link to infopage 0.490847 1.061260e-7 1.838845e-3 4.484989e-5
42 hsa-let-7e 7997940 NR_002450 SNORD68 link to infopage -0.490787 1.065619e-7 1.846398e-3 4.396186e-5
43 hsa-let-7e 7957759 NM_181861 APAF1 link to infopage 0.490765 1.067276e-7 1.849270e-3 4.300628e-5
44 hsa-let-7e 8024898 NM_018708 FEM1A link to infopage -0.489565 1.158488e-7 2.007312e-3 4.562074e-5
45 hsa-let-7e hsa-miR-103 link to infopage 0.487490 1.334024e-7 2.311464e-3 5.136586e-5
46 hsa-let-7e 7919800 NM_004079 CTSS link to infopage 0.486139 1.461596e-7 2.532508e-3 5.505452e-5
47 hsa-let-7e 8062908 NM_006282 STK4 link to infopage 0.486087 1.466733e-7 2.541408e-3 5.407250e-5
48 hsa-let-7e 8174779 NM_013995 LAMP2 link to infopage 0.484755 1.604338e-7 2.779837e-3 5.791327e-5
49 hsa-let-7e hsa-miR-425 MI0001448 link to infopage -0.484632 1.617688e-7 2.802969e-3 5.720344e-5
50 hsa-let-7e 8017393 NM_030576 LIMD2 link to infopage -0.483817 1.708634e-7 2.960550e-3 5.921100e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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